Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 124 SRGASYRNKRDKTVSRCIPYIQRGLH 201
           S   S+ N+ DK+  R   Y+ R LH
Sbjct: 64  SEDDSFNNQADKSEKRIPLYVCRVLH 89


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase
          domain protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44 YEDCATVCDIRTV 82
          Y++C TVC++  V
Sbjct: 52 YDNCITVCNMENV 64


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 KLNKIRLYSLRGAVATFVI 216
           +LNK+ ++ + GAV  F +
Sbjct: 72  RLNKLAVFIVAGAVGVFSV 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,736
Number of Sequences: 438
Number of extensions: 2187
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)