BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0788 (477 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 29 2.2 At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 29 2.2 At3g57890.1 68416.m06453 tubulin-specific chaperone C-related co... 27 6.6 At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 6.6 At4g34610.1 68417.m04916 homeodomain-containing protein similari... 27 8.7 At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 8.7 >At3g15850.1 68416.m02005 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana] Length = 371 Score = 28.7 bits (61), Expect = 2.2 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 157 KTVSRCIPYIQRGLHNAKRQITNVATAPLSEYKRILFSLVLV 282 K S + + ++GL KR +T A A +Y+RI+ S VLV Sbjct: 47 KPPSLVVAFSEKGL---KRDVTTAAAATEGDYRRIMLSDVLV 85 >At1g17410.1 68414.m02126 nucleoside diphosphate kinase family protein contains Pfam PF00334 : Nucleoside diphosphate kinase domain; similar to Nucleoside diphosphate kinase homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5) (Testis-specific nm23 homolog) (Inhibitor of p53-induced apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens} Length = 181 Score = 28.7 bits (61), Expect = 2.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +3 Query: 129 WRFLSK*TRQDRLKVHSVHSARST*RKTSDNKCCHGPSQRVQAD 260 WR L T ++ K+ HS R+ K S C HG A+ Sbjct: 115 WRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 158 >At3g57890.1 68416.m06453 tubulin-specific chaperone C-related contains weak similarity to Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814) [Homo sapiens] Length = 573 Score = 27.1 bits (57), Expect = 6.6 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +1 Query: 304 KKFEGTLRSAAEAPQEDNLAIESASA 381 K FE T RS EAP E+N E +SA Sbjct: 524 KNFEETRRSLKEAPLEENRKRELSSA 549 >At1g60200.1 68414.m06781 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF01480: PWI domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 899 Score = 27.1 bits (57), Expect = 6.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 301 AKKFEGTLRSAAEAPQEDNLAIESASAEPG 390 AK+ +GT + AE P+ + +ESA E G Sbjct: 300 AKESQGTKENQAEGPESEQDKLESADNETG 329 >At4g34610.1 68417.m04916 homeodomain-containing protein similaritry to homeotic protein BEL1, Arabidopsis thaliana, PIR2:A57632 Length = 532 Score = 26.6 bits (56), Expect = 8.7 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = +1 Query: 181 YIQRGLHNAKRQITNVATAPLSEYKRILFSLVLVACAVDAA-KKFEGTLRSAAEAPQEDN 357 Y + + + V T P S+Y + L+ A V A K+F+ E PQE N Sbjct: 123 YATQSFPGGNQNLDVVRTIPNSKYLKAAQQLLDEAVNVKKALKQFQAEGDKNNENPQEPN 182 Query: 358 LAIESASAEP 387 + + +S P Sbjct: 183 QSTQDSSTNP 192 >At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to enhancer of zeste-like protein 1(EZA1) (GI:4185507) [Arabidopsis thaliana]; similar to polycomb group [Arabidopsis thaliana] GI:1903019 (curly leaf); contains Pfam profile PF00856: SET domain Length = 856 Score = 26.6 bits (56), Expect = 8.7 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -1 Query: 435 VERQDFDSLKVQQTTARFGRSRFDS*VVLLWGLGCRSQSSLELFC 301 +ER + LK +Q T F S F + L GLG S LFC Sbjct: 222 LERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFC 266 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,415,658 Number of Sequences: 28952 Number of extensions: 169905 Number of successful extensions: 372 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 372 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 821630280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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