Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    29   2.2  
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr...    29   2.2  
At3g57890.1 68416.m06453 tubulin-specific chaperone C-related co...    27   6.6  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    27   6.6  
At4g34610.1 68417.m04916 homeodomain-containing protein similari...    27   8.7  
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    27   8.7  

>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 157 KTVSRCIPYIQRGLHNAKRQITNVATAPLSEYKRILFSLVLV 282
           K  S  + + ++GL   KR +T  A A   +Y+RI+ S VLV
Sbjct: 47  KPPSLVVAFSEKGL---KRDVTTAAAATEGDYRRIMLSDVLV 85


>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
           protein contains Pfam PF00334 : Nucleoside diphosphate
           kinase domain; similar to Nucleoside diphosphate kinase
           homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
           (Testis-specific nm23 homolog) (Inhibitor of p53-induced
           apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
          Length = 181

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 129 WRFLSK*TRQDRLKVHSVHSARST*RKTSDNKCCHGPSQRVQAD 260
           WR L   T  ++ K+   HS R+   K S   C HG      A+
Sbjct: 115 WRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 158


>At3g57890.1 68416.m06453 tubulin-specific chaperone C-related
           contains weak similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 573

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 KKFEGTLRSAAEAPQEDNLAIESASA 381
           K FE T RS  EAP E+N   E +SA
Sbjct: 524 KNFEETRRSLKEAPLEENRKRELSSA 549


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 301 AKKFEGTLRSAAEAPQEDNLAIESASAEPG 390
           AK+ +GT  + AE P+ +   +ESA  E G
Sbjct: 300 AKESQGTKENQAEGPESEQDKLESADNETG 329


>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
           to homeotic protein BEL1, Arabidopsis thaliana,
           PIR2:A57632
          Length = 532

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 181 YIQRGLHNAKRQITNVATAPLSEYKRILFSLVLVACAVDAA-KKFEGTLRSAAEAPQEDN 357
           Y  +      + +  V T P S+Y +    L+  A  V  A K+F+       E PQE N
Sbjct: 123 YATQSFPGGNQNLDVVRTIPNSKYLKAAQQLLDEAVNVKKALKQFQAEGDKNNENPQEPN 182

Query: 358 LAIESASAEP 387
            + + +S  P
Sbjct: 183 QSTQDSSTNP 192


>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 435 VERQDFDSLKVQQTTARFGRSRFDS*VVLLWGLGCRSQSSLELFC 301
           +ER +   LK +Q T  F  S F   + L  GLG    S   LFC
Sbjct: 222 LERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFC 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,658
Number of Sequences: 28952
Number of extensions: 169905
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)