Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00733 Cluster: Capsid protein p80; n=5; Nucleopolyhedr...   105   2e-22
UniRef50_Q24CW5 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_Q11QY5 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  
UniRef50_A5FM27 Cluster: Putative uncharacterized protein; n=5; ...    31   5.0  
UniRef50_Q0RCP2 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  

>UniRef50_Q00733 Cluster: Capsid protein p80; n=5;
           Nucleopolyhedrovirus|Rep: Capsid protein p80 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 691

 Score =  105 bits (252), Expect = 2e-22
 Identities = 51/59 (86%), Positives = 53/59 (89%)
 Frame = +3

Query: 3   EHXTDQDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNS 179
           EH TDQDKDYNA  TA E+N LV+TVLLRLIEKALATL NRLHITTIDQLKKFRDYLNS
Sbjct: 240 EHYTDQDKDYNAAYTADEYNSLVKTVLLRLIEKALATLKNRLHITTIDQLKKFRDYLNS 298



 Score = 38.3 bits (85), Expect = 0.033
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 178 ADADAGEFQIFLNQQDC 228
           +DADAGEFQIFLNQ+DC
Sbjct: 298 SDADAGEFQIFLNQEDC 314


>UniRef50_Q24CW5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 744

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 30  YNAVCTAVEFNYLVRTVLLRLIEKALAT--LTNRLHITTIDQLKKFRDYLNSRC*CWR 197
           +N  C  ++ N  +   L+++ +K+L    +T  L + +++++KK  D LN    C+R
Sbjct: 486 FNQKCIKLDINMYINVGLIQISKKSLIIYPITQELMLYSVNEIKKQTDILNYLISCFR 543


>UniRef50_Q11QY5 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 646

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 21  DKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSR 182
           +KD +     +E + + +   L+ I KAL  +   +   T ++LKKF DY+ ++
Sbjct: 128 EKDKDEDIKIIESSEIAKYPYLKNIAKALVNINGIIQTITHEELKKFGDYIYTK 181


>UniRef50_A5FM27 Cluster: Putative uncharacterized protein; n=5;
           Flavobacterium|Rep: Putative uncharacterized protein -
           Flavobacterium johnsoniae UW101
          Length = 126

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 30  YNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYL 173
           YN      + N +    L + IE  L TL+N++HI  I   KKF  YL
Sbjct: 51  YNLEVVKAKLNAVKALGLNQDIEDILITLSNQIHIIDISPNKKFMIYL 98


>UniRef50_Q0RCP2 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 857

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 15  DQDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTID 146
           D+  +   +C+ VE     RTVL ++   A     +R+H+T  D
Sbjct: 482 DEQANLTVICSTVEIGQGARTVLAQIAADATGVALDRVHVTYPD 525


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,935,759
Number of Sequences: 1657284
Number of extensions: 2780596
Number of successful extensions: 5753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5752
length of database: 575,637,011
effective HSP length: 55
effective length of database: 484,486,391
effective search space used: 10174214211
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)