Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   1.3  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    24   2.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    24   2.3  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    24   3.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    23   7.2  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    23   7.2  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    22   9.5  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    22   9.5  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 204  LKFSSISICYSNNL*TFSIDQ*LLCATDSLEWPALFRLNAKE 79
            LK  + S+ YS     F +D  +LCA    +W  LF  + +E
Sbjct: 2578 LKVCTGSLPYSPTEHGFWLDHWILCAQKLNQWDVLFDFSKQE 2619


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 15  DQDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLT 119
           D   DY A C A+E   +   VL   + K   TLT
Sbjct: 248 DGKTDYPAACNAIETLLINEAVLSSHLPKIAETLT 282


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 57  FNYLVRTVLLRLIEKALATLTNRLHITTIDQ--LKKFRDYLN 176
           F   ++  L   +  +  TLT+ LH+T +D    + F++YL+
Sbjct: 443 FPLQIKDTLSEFLGNSANTLTSLLHLTVLDLKIFEWFKEYLS 484


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 177 SRC*CWRISNIFK 215
           SRC  WRI N+FK
Sbjct: 79  SRCGFWRILNLFK 91


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 50  RRVQLLGQDGSFAFNRKSAGHSNESVAHNNY 142
           R++   G  GSF F+   +G     +  NNY
Sbjct: 291 RQIASYGVYGSFHFSSSESGSFANLIGTNNY 321


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 80  SFAFNRKSAGHSNESVAHNNY 142
           S AFN KSA   +E+++  NY
Sbjct: 597 SHAFNLKSAYGESEALSFTNY 617


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 127 NRFVRVASAFSIKRKRTVLTK*LNSTAVHT 38
           ++ V+ A+ F +  KRTVLT    S+A+ T
Sbjct: 40  HQVVQEATKFMVHSKRTVLTSADISSALRT 69


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 201 KFSSISICYSNNL*TFSIDQ*LLCATD 121
           K  SIS CY N   T+S  Q L C T+
Sbjct: 690 KKHSISWCYQNANTTYSKFQSLECQTN 716


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   RTXHRSGQGLQRGVHCRRVQLLGQD-GSFAFNRKSAGHSNESVAHNNY 142
           +T  R+G G Q   +  R    G++   F  NR+   H+   VAH+N+
Sbjct: 567 KTIKRTGLG-QFAFYEIRYDADGKEIPDFVLNREPYRHATVLVAHDNF 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 812,373
Number of Sequences: 5004
Number of extensions: 11902
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)