BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0787 (230 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 1.3 SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 24 2.3 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 24 2.3 SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 24 3.1 SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 7.2 SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 23 7.2 SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 23 7.2 SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 22 9.5 SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 22 9.5 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.0 bits (52), Expect = 1.3 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -3 Query: 204 LKFSSISICYSNNL*TFSIDQ*LLCATDSLEWPALFRLNAKE 79 LK + S+ YS F +D +LCA +W LF + +E Sbjct: 2578 LKVCTGSLPYSPTEHGFWLDHWILCAQKLNQWDVLFDFSKQE 2619 >SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 451 Score = 24.2 bits (50), Expect = 2.3 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +3 Query: 15 DQDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLT 119 D DY A C A+E + VL + K TLT Sbjct: 248 DGKTDYPAACNAIETLLINEAVLSSHLPKIAETLT 282 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 24.2 bits (50), Expect = 2.3 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 57 FNYLVRTVLLRLIEKALATLTNRLHITTIDQ--LKKFRDYLN 176 F ++ L + + TLT+ LH+T +D + F++YL+ Sbjct: 443 FPLQIKDTLSEFLGNSANTLTSLLHLTVLDLKIFEWFKEYLS 484 >SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces pombe|chr 1|||Manual Length = 320 Score = 23.8 bits (49), Expect = 3.1 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +3 Query: 177 SRC*CWRISNIFK 215 SRC WRI N+FK Sbjct: 79 SRCGFWRILNLFK 91 >SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 22.6 bits (46), Expect = 7.2 Identities = 10/31 (32%), Positives = 15/31 (48%) Frame = +2 Query: 50 RRVQLLGQDGSFAFNRKSAGHSNESVAHNNY 142 R++ G GSF F+ +G + NNY Sbjct: 291 RQIASYGVYGSFHFSSSESGSFANLIGTNNY 321 >SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 690 Score = 22.6 bits (46), Expect = 7.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 80 SFAFNRKSAGHSNESVAHNNY 142 S AFN KSA +E+++ NY Sbjct: 597 SHAFNLKSAYGESEALSFTNY 617 >SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces pombe|chr 3|||Manual Length = 452 Score = 22.6 bits (46), Expect = 7.2 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 127 NRFVRVASAFSIKRKRTVLTK*LNSTAVHT 38 ++ V+ A+ F + KRTVLT S+A+ T Sbjct: 40 HQVVQEATKFMVHSKRTVLTSADISSALRT 69 >SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 849 Score = 22.2 bits (45), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 201 KFSSISICYSNNL*TFSIDQ*LLCATD 121 K SIS CY N T+S Q L C T+ Sbjct: 690 KKHSISWCYQNANTTYSKFQSLECQTN 716 >SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 22.2 bits (45), Expect = 9.5 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 2 RTXHRSGQGLQRGVHCRRVQLLGQD-GSFAFNRKSAGHSNESVAHNNY 142 +T R+G G Q + R G++ F NR+ H+ VAH+N+ Sbjct: 567 KTIKRTGLG-QFAFYEIRYDADGKEIPDFVLNREPYRHATVLVAHDNF 613 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 812,373 Number of Sequences: 5004 Number of extensions: 11902 Number of successful extensions: 28 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 28 length of database: 2,362,478 effective HSP length: 56 effective length of database: 2,082,254 effective search space used: 41645080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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