Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17...    27   2.1  
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604...    27   2.8  
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712...    25   8.6  

>02_01_0028 -
           172243-172435,172550-172701,172801-173341,173640-173824
          Length = 356

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 18  QDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQL 152
           Q ++   V T + F+ L+  V+  L++KAL    NRL + T+ QL
Sbjct: 4   QAEECRTVMTMLVFD-LISAVMTALVKKALEQGLNRLVLITLRQL 47


>07_01_0780 +
           6047375-6047494,6047603-6047713,6047804-6047926,
           6048035-6048168,6048273-6049551
          Length = 588

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 24  KDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTI 143
           +DY  VC + +F+  V T     +E  L  L + L ITT+
Sbjct: 67  RDYLHVCESQKFHAEVLTAEKENVELGLVELVSELKITTL 106


>05_03_0482 -
           14568108-14568284,14568912-14569970,14570532-14571236,
           14571376-14571656,14571748-14571769
          Length = 747

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 30  YNAVCTAVEFNYLVRTV 80
           YN VC A  ++YLV+ V
Sbjct: 472 YNVVCEATPYSYLVQNV 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,216,801
Number of Sequences: 37544
Number of extensions: 75928
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)