BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0787 (230 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17... 27 2.1 07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 27 2.8 05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712... 25 8.6 >02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-173824 Length = 356 Score = 27.1 bits (57), Expect = 2.1 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 18 QDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQL 152 Q ++ V T + F+ L+ V+ L++KAL NRL + T+ QL Sbjct: 4 QAEECRTVMTMLVFD-LISAVMTALVKKALEQGLNRLVLITLRQL 47 >07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926, 6048035-6048168,6048273-6049551 Length = 588 Score = 26.6 bits (56), Expect = 2.8 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 24 KDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTI 143 +DY VC + +F+ V T +E L L + L ITT+ Sbjct: 67 RDYLHVCESQKFHAEVLTAEKENVELGLVELVSELKITTL 106 >05_03_0482 - 14568108-14568284,14568912-14569970,14570532-14571236, 14571376-14571656,14571748-14571769 Length = 747 Score = 25.0 bits (52), Expect = 8.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 30 YNAVCTAVEFNYLVRTV 80 YN VC A ++YLV+ V Sbjct: 472 YNVVCEATPYSYLVQNV 488 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,216,801 Number of Sequences: 37544 Number of extensions: 75928 Number of successful extensions: 108 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 108 length of database: 14,793,348 effective HSP length: 55 effective length of database: 12,728,428 effective search space used: 267296988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -