Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.4  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                27   2.4  
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)             25   7.3  

>SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 15  DQDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLT 119
           DQ+K  NA C A E +    T L+ L E+   T+T
Sbjct: 84  DQEKRINAACRAYECDPTSPTALILLAEEKAQTIT 118


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 21  DKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSR 182
           DKD N V T VEF  ++R+  + + E  L  L   L     D L  +R+  + R
Sbjct: 194 DKDKNWVVTRVEFRNIIRSTGIPITESDLEDLIMALDRDDNDAL-DYRELASGR 246


>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
          Length = 798

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 11  HRSGQGLQRGVHCRRVQLLGQDGSFAFNR 97
           +R  Q  +    CRRVQLL   G   FNR
Sbjct: 115 YRVVQFSENSTECRRVQLLHYFGETDFNR 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,118,128
Number of Sequences: 59808
Number of extensions: 89674
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 16,821,457
effective HSP length: 54
effective length of database: 13,591,825
effective search space used: 299020150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)