Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0787
(230 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical ... 29 0.59
Z81523-12|CAH60774.1| 364|Caenorhabditis elegans Hypothetical p... 28 0.77
Z81086-10|CAH60775.1| 364|Caenorhabditis elegans Hypothetical p... 28 0.77
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 27 1.8
AC006674-8|AAF39938.2| 131|Caenorhabditis elegans Hypothetical ... 27 1.8
Z70285-3|CAE17840.1| 214|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81091-4|CAD56588.1| 287|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical pr... 25 5.5
AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein. 25 5.5
Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF040655-1|AAK84577.2| 678|Caenorhabditis elegans Hypothetical ... 25 9.5
>AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical
protein F45D11.5 protein.
Length = 133
Score = 28.7 bits (61), Expect = 0.59
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 90 LIEKALATLTNRLHITTIDQLKKFRDYLNSRC*CWRISNIF 212
LIEK+ T+ +LH +++ ++Y S+ W IS F
Sbjct: 89 LIEKSQLTVNEKLHFAMQHRMENLKEYCLSKIKLWTISAQF 129
>Z81523-12|CAH60774.1| 364|Caenorhabditis elegans Hypothetical
protein F32H2.11 protein.
Length = 364
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 18 QDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLN 176
QD DY+ VC +F + ++ L+EK+ L I ++ +Y+N
Sbjct: 91 QDTDYHNVCNQKDFMFRRHCIVAHLLEKSQWLLFLDADIAVVNPDVLIEEYIN 143
>Z81086-10|CAH60775.1| 364|Caenorhabditis elegans Hypothetical
protein F32H2.11 protein.
Length = 364
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 18 QDKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLN 176
QD DY+ VC +F + ++ L+EK+ L I ++ +Y+N
Sbjct: 91 QDTDYHNVCNQKDFMFRRHCIVAHLLEKSQWLLFLDADIAVVNPDVLIEEYIN 143
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 56 VQLLGQDGSFAFNRKSAGHSNESV 127
V L+GQ+ +F+ N AGH N SV
Sbjct: 743 VGLVGQELNFSVNASQAGHGNLSV 766
>AC006674-8|AAF39938.2| 131|Caenorhabditis elegans Hypothetical
protein K12H6.9 protein.
Length = 131
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 138 LLCATDSLEWPALFRLNAK 82
+ CA D+L+W ALF + +K
Sbjct: 12 VFCAADALDWTALFGIQSK 30
>Z70285-3|CAE17840.1| 214|Caenorhabditis elegans Hypothetical
protein F56C4.3 protein.
Length = 214
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 21 DKDYNAVCTAVEFNYLVRTVLLRLIEKALATLTNRLHITTIDQLKKF 161
DK+ + V + + YL+R V+ ++ A + +RLH ++D +K+
Sbjct: 139 DKEVDHVI--ILWRYLLRDVMKKIKAGTTADIAHRLHQMSLDDSRKY 183
>Z81091-4|CAD56588.1| 287|Caenorhabditis elegans Hypothetical
protein F55H12.5 protein.
Length = 287
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 72 RTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSR 182
R LL + +T + R TT+ KKF D++NS+
Sbjct: 10 RASLLAAVNNRASTRSTRKKKTTMLSPKKFCDFINSK 46
>Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical
protein C26H9A.1 protein.
Length = 966
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 38 GVHCRRVQLLGQDGSFAFNRKSAGHSNES 124
G HC L+G F F +++ G+ NE+
Sbjct: 683 GSHCAPSLLIGLINMFMFKKRNEGYLNEN 711
>AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein.
Length = 966
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 38 GVHCRRVQLLGQDGSFAFNRKSAGHSNES 124
G HC L+G F F +++ G+ NE+
Sbjct: 683 GSHCAPSLLIGLINMFMFKKRNEGYLNEN 711
>Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical
protein E03H4.7 protein.
Length = 624
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 24 KDYNAVCTAVEFN---YLVRTVLLRLIE-KALATLTNRLHIT 137
KD+ CT ++FN Y T RL + K + T+ +H+T
Sbjct: 564 KDFKGRCTLIDFNPEFYNNSTGTFRLFDSKGFSYYTSGMHLT 605
>AF040655-1|AAK84577.2| 678|Caenorhabditis elegans Hypothetical
protein T24E12.5 protein.
Length = 678
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 93 IEKALATLTNRLHITTIDQLKKFRDYL 173
IEK L L++R + T+ KKFRDY+
Sbjct: 568 IEKEL--LSDRSYPATLQLQKKFRDYI 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,705
Number of Sequences: 27780
Number of extensions: 69103
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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