Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   6.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   6.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   6.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   6.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   6.1  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 5   TXHRSGQGLQRGVHCRRVQLLGQDGSFAFNRKSAGHSNESVAH 133
           T + +G+  ++     R Q L  +  F FNR         +AH
Sbjct: 1   TVNANGEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 43


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 114 LTNRLHITTIDQLKKFRDYLNSR 182
           +   LH+      K F DY NS+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSK 222


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 114 LTNRLHITTIDQLKKFRDYLNSR 182
           +   LH+      K F DY NS+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSK 222


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 132 CATDSLEWP 106
           CATD   WP
Sbjct: 169 CATDFSSWP 177


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 229 HNLAGLKIFE 200
           +++AGLKIFE
Sbjct: 20  YSVAGLKIFE 29


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 24  KDYNAVCTAVEFNY 65
           ++YN +   +EF Y
Sbjct: 256 REYNGIGAVIEFKY 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,636
Number of Sequences: 438
Number of extensions: 658
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)