Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0787
         (230 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78640.1 68414.m09165 expressed protein ; expression supporte...    27   1.7  
At3g02160.1 68416.m00188 hypothetical protein                          25   6.7  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    25   8.9  
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr...    25   8.9  

>At1g78640.1 68414.m09165 expressed protein ; expression supported
           by MPSS
          Length = 487

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 132 CATDSLEWPALFRLNAKEPS 73
           C+T  L +  LFR+NAK P+
Sbjct: 461 CSTSKLHFSVLFRVNAKAPA 480


>At3g02160.1 68416.m00188 hypothetical protein
          Length = 397

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 20  GQGLQRGVHCRRVQLLGQDGSFAFNRKSAGHSNESVAHNNY 142
           G   QR +H +R    G D +F+  R +     ESV  N Y
Sbjct: 24  GGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPY 64


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 32   QRGVHCRRVQLLGQDGS 82
            + G  CRR+ L+G DGS
Sbjct: 3475 RHGSSCRRLTLIGSDGS 3491


>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 352

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 38  GVHCRRVQLLGQDGSFAFNRKSAGHS 115
           G H   + L+ + GSF F+++S+ +S
Sbjct: 57  GSHHNHLSLVSEAGSFCFSQESSSYS 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,208
Number of Sequences: 28952
Number of extensions: 60965
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 12,070,560
effective HSP length: 56
effective length of database: 10,449,248
effective search space used: 208984960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)