Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0786
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.33
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 1.0
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.1
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 4.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.1
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 4.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 4.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 5.4
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.2
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 9.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 24 9.5
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.33
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 158 WWPVRATTVCDVIQCTAWGIQTIRC 232
WWP + T VC ++ W I I C
Sbjct: 83 WWPCKTTVVCLILFLLFWIIVLISC 107
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 369 SHLDRVVLQCSKEALFYGHCS 307
S L++V L +E LFYG CS
Sbjct: 198 SRLNQVSLSIDREGLFYGQCS 218
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 253 IEDQTGRA-TYSLYSPGSTLNDVADSCRPHRPPAGTIQPA 137
I D+ GR + S+Y G+TL + +P +P G P+
Sbjct: 151 ITDEFGRTRSVSIYETGNTLLSQKEEYKPEKPIYGDYMPS 190
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 193 HSVYCLGNTNYTLPGRFGLRYEKQDLQIG 279
HS Y TN T+ GR L +DL+ G
Sbjct: 38 HSAYVYMTTNPTIAGRIFLPINNEDLEDG 66
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -3
Query: 404 ALNASIVAASK*AILTEWF----FSVQKRLYFTVIVLELTIFRSIFPI 273
+++ SIV+AS +L EWF ++++++ + E F I+PI
Sbjct: 90 SIDYSIVSASLWHMLVEWFGLEGLAIERKVLLVGLAAEQKPFVDIYPI 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.1
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = -1
Query: 232 ATYSLYSPGSTLNDVADSCRPHRPPAGTIQPASLSLHSSCYKLSSFFACLVSLSPPSVTI 53
+T S S S+ + S RP + + +SLS H S S A + S + T
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429
Query: 52 SKRAGEQEAHGQSS 11
S+ + +H SS
Sbjct: 430 SRSSSHSSSHSLSS 443
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -2
Query: 282 LSNLQVLFFISKTKPAGQRIVCIPQAVH*MTSQTVVALTGHQPEPFSRRPCPCIVLVTSF 103
+SN Q ++ +PA I IP A+H + T + +TG P S+R P L +
Sbjct: 171 VSNGQPHNLPAQAQPA--TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSRLSSMN 228
Query: 102 HLSLRVSSACRR 67
+ L S+A +
Sbjct: 229 EMQLLASAAANQ 240
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 279 KDAAKNCKLKNNDRKIKPLLNTE 347
K KN K+KN ++KPLL TE
Sbjct: 155 KVCMKNEKMKNLMEQLKPLLQTE 177
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 133 LSLHSSCYKLSSFFACLVSLSPPSVTISK 47
LS + +CY S + SLSP +VT +K
Sbjct: 908 LSCNGACYNPSQYVCSDGSLSPNTVTTTK 936
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 443 PSPQSYSPFTEKTALNASIVAASK*AILTEWFFSVQKRLYFTVIVLELTI 294
P P +SPF L+ S AA + ++ V RLY ++ TI
Sbjct: 696 PGPTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVYHRLYDNTVIERETI 745
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 58 SPMAATS*RDTQRKMKACNKNYARTRTPAEWFRLVAGE 171
SP+ ++S +M N N++R+RTP+ R GE
Sbjct: 265 SPLLSSSVFFKDTEMSTPNSNHSRSRTPSSKKRTRWGE 302
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = +3
Query: 336 LNTEEPLCQ---DGLLACGDYTC 395
+NTE C+ D LL CG++TC
Sbjct: 331 VNTEPFRCENVCDELLPCGEHTC 353
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 181 SCRPHRPPAGTIQPASLSLHSSCYKLSSFFACLVSLSPPSVTISKRAGE 35
+C P+ A IQ S ++ S Y+L + AC +S + P ++I G+
Sbjct: 598 NCTPNSI-ASIIQKKSYNVSSITYELLNEDACALSRTIPKLSILPTNGQ 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,162
Number of Sequences: 5004
Number of extensions: 37749
Number of successful extensions: 104
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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