Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0786
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1100 + 24303920-24304001,24304080-24304576,24304745-243048... 31 0.33
01_01_0952 + 7469812-7470020,7471013-7471448 29 2.3
05_01_0341 - 2679404-2680579 28 4.0
01_01_0064 + 509846-510556 28 4.0
11_04_0372 + 16915047-16915406,16915493-16916341 27 7.1
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 27 7.1
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 7.1
01_01_0761 - 5874953-5876803 27 7.1
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 27 9.3
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 27 9.3
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409... 27 9.3
01_06_0863 + 32536695-32536906,32537832-32538216 27 9.3
>08_02_1100 +
24303920-24304001,24304080-24304576,24304745-24304842,
24304982-24305813,24306463-24306645,24306726-24307346
Length = 770
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 131 QGRRLNGSGWWPVRATTVCDVIQC-TAWGIQTIRCP 235
Q R +NG WW ++ C + +C TA G+ CP
Sbjct: 733 QSRGINGVNWWGLQVDDHCALARCPTAPGVSAPGCP 768
>01_01_0952 + 7469812-7470020,7471013-7471448
Length = 214
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -1
Query: 259 FHIEDQTGRATYSLYSPGSTLNDVADSCRPHRPPAGTIQPASLSLHSSCYKLSSFFACLV 80
FH+ + G Y G+ LN + R P +I P + LHSS Y + +
Sbjct: 60 FHVATKLGFHRLFQYLMGANLN--SSRIRMTTPILTSIVPGAGPLHSSAYFVRLYLPAKF 117
Query: 79 SLSPP 65
SPP
Sbjct: 118 QASPP 122
>05_01_0341 - 2679404-2680579
Length = 391
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 300 YNFSQHLSNLQVLFFISKTKPAGQRIVCIPQAVH*MTSQTVVALTGHQPEPF 145
Y F +++ VL+ ++ K A R+VCI ++ + S T+ AL EP+
Sbjct: 138 YPFDLPTADIPVLYGLAAAKSASFRVVCIARS---LDSTTLRALVLSSDEPY 186
>01_01_0064 + 509846-510556
Length = 236
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 253 IEDQTGRATYSLYSPGSTLNDVADSCRPHRPPAGTIQPASLSLHSSCYKLSS 98
I+D+ RA S S + D+CR R A + A++ LH++ Y LSS
Sbjct: 43 IQDEPSRADLSSSSAAT------DACRLIRDTAAGLTHATIHLHNAAYYLSS 88
>11_04_0372 + 16915047-16915406,16915493-16916341
Length = 402
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 139 ASLSLHSSCYKLSSFFACLVSLSPPSVTISKRAGEQEAH 23
ASL++ + KLSS+ A +S S S T S RA +++ H
Sbjct: 6 ASLAIRKALEKLSSYLAASLSASSSSPT-SGRARQEKDH 43
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 VTRTMQGQGRRLNGSGWWPVR-ATTVCDVIQ 199
V RT Q + R NG G WP + A + D+++
Sbjct: 67 VGRTAQAKSRHSNGQGRWPAKSARFILDLLK 97
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 116 RTMQGQGRRLNGSGWWPVRATTVCD 190
R + QG+ GWWP +A T D
Sbjct: 322 RLIDQQGKAPGVIGWWPAKAVTFVD 346
>01_01_0761 - 5874953-5876803
Length = 616
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 175 RPHRPPAGTIQPASLSLHSSCY 110
RPHRPP G+ P S L S +
Sbjct: 64 RPHRPPPGSFGPCSTLLLSHSF 85
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 122 MQGQGRRLNGS-GWWPVRATTVCD 190
++G+ + G GWWP +ATT D
Sbjct: 288 LRGEDGKAPGMIGWWPAKATTFVD 311
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 122 MQGQGRRLNGS-GWWPVRATTVCD 190
++G+ + G GWWP +ATT D
Sbjct: 288 LRGEDGKAPGMIGWWPAKATTFID 311
>02_04_0151 -
20240418-20240438,20240608-20240775,20240855-20240962,
20241519-20241605,20241687-20241728,20241875-20241937,
20242007-20242069,20242129-20242497,20242577-20242669,
20242746-20242838,20242942-20243145,20243305-20243549,
20243649-20243808
Length = 571
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 57 VTDGGDKLTRHAKKDESL*QELCKDK 134
+ D +KL HA+K + L Q+L K+K
Sbjct: 344 IIDDVEKLKEHAQKQDQLIQQLLKEK 369
>01_06_0863 + 32536695-32536906,32537832-32538216
Length = 198
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 166 GEGDNCLRRHSVYCLGNTNYTLPGRFGLRYEKQDLQIGKML---RKIVSSRTMTVK*SLF 336
G+G+ C R V +T PGRF + EK + + + ++V S+T + +
Sbjct: 29 GDGERCATRRVVQSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEEDVT 88
Query: 337 *TLKNHSVKMAY 372
+K+ S+ + +
Sbjct: 89 DEMKSGSLSLGF 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,839
Number of Sequences: 37544
Number of extensions: 294608
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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