Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0786
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_32859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019) 29 2.4
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 3.1
SB_24249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3) 28 4.2
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 27 5.5
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 27 5.5
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_6423| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 7.3
SB_21360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_36793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 149 GSGWWPVRATTVCDVIQCTAWGIQTIRCPAGLVFDMKNKTC 271
GS +A C ++Q AWG RCPA D NK C
Sbjct: 209 GSSLSTTQAACCCSMMQSKAWGPDCKRCPAPGT-DEYNKLC 248
>SB_32859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 423 TVYRKDRVKCKYSRRKQVSHLDRVVLQCSKEALFYGHCS*AYNFSQHLSNLQ 268
T K+R++ ++S +VS D + + K +F G CS Y+FS L+
Sbjct: 16 TSLHKNRIELRFS---EVSSSDILSRRARKSVIFLGFCSTLYDFSHFFFRLE 64
>SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)
Length = 283
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 253 IEDQTGRATYSLYSPGSTLNDVADSCRPHRPPAGTIQPASLSL 125
++ GR + P T VA P PP GT+ PASL L
Sbjct: 94 VDTPRGRDGQGVARPVVTGRRVASEHAPTPPPRGTVAPASLVL 136
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 370 YLLAATILAFNAVFSVNGE*DCGDGSDE 453
Y +T F +GE DCGDGSDE
Sbjct: 2419 YSCRSTSRCVPLAFVCDGENDCGDGSDE 2446
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 418 NGE*DCGDGSDE 453
+GE DCGDGSDE
Sbjct: 2946 DGEDDCGDGSDE 2957
>SB_24249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 423 TVYRKDRVKCKYSRRKQVSHLDRVVLQCSKEALFYGHCS*AYNFSQHLSNLQ 268
T K+R++ ++S +VS D + + K +F G CS Y+FS L+
Sbjct: 16 TSLHKNRIELRFS---EVSSSDILSRRARKFVIFLGFCSTLYDFSHFFFRLE 64
>SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3)
Length = 540
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 381 RKQVSHLDRVVLQCSKEALFYGHCS*AYNFSQHLSNLQ 268
RK + +DRVV LF+G N S HL+++Q
Sbjct: 57 RKGIMDVDRVVTMRDNWFLFHGQLDSTNNLSLHLTHVQ 94
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 197 QCTAWGIQTIRCPAGLVFDMKNKTCRLERCCE 292
Q TA G Q +CP G + NKTC CE
Sbjct: 411 QNTAGGYQC-QCPRGYIMQQDNKTCEDINECE 441
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 444 SIATVLFTVYRKDRVKCKYSRRK--QVSHLDRVVLQCSKEALFYGH 313
S++ + TV++ KC+ +K Q HL R V C KE GH
Sbjct: 678 SLSRHIRTVHQDKAFKCERCEKKFSQPYHLTRHVKGCHKEKAMKGH 723
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 265 LVFHIEDQTGRATYSLYSPGSTLNDVADSCRPHRPPAGTIQPAS 134
L+F +D G T + Y+ G+ + V D P+R IQP+S
Sbjct: 353 LIFDDDDGDGGLTVTRYASGNAFSGVGDGKHPYR---RDIQPSS 393
>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 250 EDQTGRATYSLYSPGSTLNDVADSCRP 170
ED+ G++ YSL SP ++L V + +P
Sbjct: 331 EDREGKSKYSLESPVTSLKSVPEPSKP 357
>SB_6423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 160 VAGEGDNCLRRHSVYCLGNT 219
+A GDN RRH YC+G T
Sbjct: 1 MAAIGDNRRRRHESYCVGPT 20
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 261 TRPA--DWKDAAKNCKLKNNDRKIKPLLNTEEPLCQ 362
T+PA DWK A + K + + + ++P +EP CQ
Sbjct: 282 TQPAEPDWKPAEPDLKHEPDHKPVEPDHTADEPGCQ 317
>SB_21360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 160 VAGEGDNCLRRHSVYCLGNT 219
+A GDN RRH YC+G T
Sbjct: 2 MAAIGDNRRRRHESYCVGPT 21
>SB_36793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 338 QKRLYFTVIVLELTIF---RSIFPICRSCFSYR 249
+KR +I E+ +F R +FP CR+C YR
Sbjct: 27 EKREILRLIRCEMGLFEASRHVFPSCRACCIYR 59
>SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 88 TQRKMKACNKNYARTR---TPAEWFRLVAGE-GDNCLRRHSVYCLGNTNYTLPGRFGLRY 255
T R++KA + T+ + W +L E GD LRR V+C + + +R+
Sbjct: 525 TSRRVKAALRGNPLTKKEESVLRWLKLFIDECGDKMLRRFLVFCTASDSLAPDKTIQVRF 584
Query: 256 E 258
E
Sbjct: 585 E 585
>SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 88 TQRKMKACNKNYARTR---TPAEWFRLVAGE-GDNCLRRHSVYCLGNTNYTLPGRFGLRY 255
T R++KA + T+ + W +L E GD LRR V+C + + +R+
Sbjct: 660 TSRRVKAALRGNPLTKKEESVLRWLKLFIDECGDKMLRRFLVFCTASDSLAPDKTIQVRF 719
Query: 256 E 258
E
Sbjct: 720 E 720
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,948
Number of Sequences: 59808
Number of extensions: 330620
Number of successful extensions: 1056
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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