Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0786
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 31 0.52
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 30 0.91
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 30 0.91
AY204175-1|AAO39179.1| 238|Caenorhabditis elegans nuclear recep... 29 1.2
AL021470-2|CAE17952.1| 398|Caenorhabditis elegans Hypothetical ... 29 1.2
AL021470-1|CAA16292.1| 401|Caenorhabditis elegans Hypothetical ... 29 1.2
Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z37983-10|CAA86060.4| 267|Caenorhabditis elegans Hypothetical p... 28 2.8
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 28 2.8
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 28 2.8
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 28 2.8
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 28 2.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.7
U53333-7|AAA96160.1| 76|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 27 6.4
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 30.7 bits (66), Expect = 0.52
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 194 IQCTAWGIQTIRCPAGLVFDMKNKTCRLERCCE 292
I C A G +CP LVF+ + + CR E C E
Sbjct: 116 ISCVAGGAYMAKCPDSLVFNERTQDCR-ESCDE 147
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 340 TLKNHSVKMA--YLLAATILAFNAVFSVNGE*DCGDGSDE 453
T H+ K+A + A+ N F +GE DC DGSDE
Sbjct: 248 TAIQHTCKLAEEFACKASHNCINKAFVCDGELDCSDGSDE 287
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 340 TLKNHSVKMA--YLLAATILAFNAVFSVNGE*DCGDGSDE 453
T H+ K+A + A+ N F +GE DC DGSDE
Sbjct: 250 TAIQHTCKLAEEFACKASHNCINKAFVCDGELDCSDGSDE 289
>AY204175-1|AAO39179.1| 238|Caenorhabditis elegans nuclear receptor
NHR-65 protein.
Length = 238
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 227 RCPAGLVFDMKNKTCRLERCCE 292
+C L+F +K K CRL+RC E
Sbjct: 48 KCENHLIFALKCKNCRLQRCYE 69
>AL021470-2|CAE17952.1| 398|Caenorhabditis elegans Hypothetical
protein Y17D7A.3b protein.
Length = 398
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 227 RCPAGLVFDMKNKTCRLERCCE 292
+C L+F +K K CRL+RC E
Sbjct: 48 KCENHLIFALKCKNCRLQRCYE 69
>AL021470-1|CAA16292.1| 401|Caenorhabditis elegans Hypothetical
protein Y17D7A.3a protein.
Length = 401
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 227 RCPAGLVFDMKNKTCRLERCCE 292
+C L+F +K K CRL+RC E
Sbjct: 48 KCENHLIFALKCKNCRLQRCYE 69
>Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 65 WRRQADETRKER*KLVTRTMQGQGRR--LNGSGWWPVRATTVCDVI 196
W R+ RK+ K++T TM G +R N SGW + C +
Sbjct: 521 WYRKCSFGRKDVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTL 566
>Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 65 WRRQADETRKER*KLVTRTMQGQGRR--LNGSGWWPVRATTVCDVI 196
W R+ RK+ K++T TM G +R N SGW + C +
Sbjct: 521 WYRKCSFGRKDVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTL 566
>Z37983-10|CAA86060.4| 267|Caenorhabditis elegans Hypothetical
protein B0393.7 protein.
Length = 267
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 370 YLLAATILAFNAVFSVNGE*DCGDGSDE 453
Y A T+ A + ++G+ DCGDGSDE
Sbjct: 114 YKCAKTMNCVFAKWLMDGKDDCGDGSDE 141
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 352 HSVKMAYLLAATILAFNAVFSVNGE*DCGDGSDE 453
H +++L L F +GE DC DGSDE
Sbjct: 73 HHCSTSFMLCKNGLCVANEFKCDGEDDCRDGSDE 106
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 352 HSVKMAYLLAATILAFNAVFSVNGE*DCGDGSDE 453
H +++L L F +GE DC DGSDE
Sbjct: 73 HHCSTSFMLCKNGLCVANEFKCDGEDDCRDGSDE 106
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 352 HSVKMAYLLAATILAFNAVFSVNGE*DCGDGSDE 453
H +++L L F +GE DC DGSDE
Sbjct: 73 HHCSTSFMLCKNGLCVANEFKCDGEDDCRDGSDE 106
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 447 RSIATVLFTVYRKDRVKCK-YSRRKQVSHLDRVVLQCSKEALFY 319
+ +T T +R+D+++ ++ K+ SH D VL CS + +FY
Sbjct: 91 KKCSTCQRTFFREDQLQRHLHNHLKERSHFDCPVLNCSMQFVFY 134
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 409 FSVNGE*DCGDGSDE 453
F +GE DCGDGSDE
Sbjct: 3024 FICDGEDDCGDGSDE 3038
Score = 26.6 bits (56), Expect = 8.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 418 NGE*DCGDGSDE 453
+GE DCGDGSDE
Sbjct: 1333 DGENDCGDGSDE 1344
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 409 FSVNGE*DCGDGSDE 453
F +GE DCGDGSDE
Sbjct: 3024 FICDGEDDCGDGSDE 3038
Score = 26.6 bits (56), Expect = 8.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 418 NGE*DCGDGSDE 453
+GE DCGDGSDE
Sbjct: 1333 DGENDCGDGSDE 1344
>U53333-7|AAA96160.1| 76|Caenorhabditis elegans Hypothetical
protein F36A4.5 protein.
Length = 76
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 178 NCLRRHSVYCLGNTNYTLPGRFGLRYEKQDLQ 273
NC + YC+ T RFG RY K D++
Sbjct: 24 NCSADGNTYCVQPVKPTTVSRFGTRYIKFDIK 55
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 353 WFFSVQKRLYFTVIVLELTIF 291
W +QK+L FTVI L+L +F
Sbjct: 810 WSSPIQKKLKFTVIPLKLQVF 830
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
protein H08M01.2b protein.
Length = 1341
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 85 DTQRKMKACNKNYARTRTPAEWFRLVAGEGDNCLRRH 195
D +K++ KN+ EW R++AGE D + H
Sbjct: 545 DFNQKLETV-KNFLEVDDRYEWMRIMAGERDQIIVNH 580
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
protein H08M01.2a protein.
Length = 1320
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 85 DTQRKMKACNKNYARTRTPAEWFRLVAGEGDNCLRRH 195
D +K++ KN+ EW R++AGE D + H
Sbjct: 545 DFNQKLETV-KNFLEVDDRYEWMRIMAGERDQIIVNH 580
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,040,609
Number of Sequences: 27780
Number of extensions: 236953
Number of successful extensions: 791
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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