Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0786
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 29 1.9
At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g... 27 4.5
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 27 4.5
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 27 4.5
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 27 5.9
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ... 27 7.8
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si... 27 7.8
At5g18310.2 68418.m02155 expressed protein predicted proteins, D... 27 7.8
At5g18310.1 68418.m02154 expressed protein predicted proteins, D... 27 7.8
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ... 27 7.8
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 27 7.8
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 27 7.8
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr... 27 7.8
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Frame = -1
Query: 247 DQTGRATYSLYSPGSTLN---DVADSCRPHR---PPAG 152
DQ + Y+ P +L+ D A+SCRPHR PP G
Sbjct: 1362 DQAASSRYTTSVPQPSLSIDKDQAESCRPHRVIWPPTG 1399
>At1g76130.1 68414.m08841 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative strong
similarity to alpha-amylase GI:7532799 from [Malus x
domestica];contains Pfam profile PF00128: Alpha amylase,
catalytic domain
Length = 413
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 116 RTMQGQGRRLNGSGWWPVRATTVCD 190
R QG+ GWWP RA T D
Sbjct: 273 RLCDAQGKPPGVMGWWPSRAVTFLD 297
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 VTRTMQGQGRRLNGSGWWPVR-ATTVCDVIQ 199
V RT Q + R NG G WP + A V D+++
Sbjct: 67 VGRTAQAKNRHSNGQGRWPAKSAQFVLDLLK 97
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 VTRTMQGQGRRLNGSGWWPVR-ATTVCDVIQ 199
V RT Q + R NG G WP + A V D+++
Sbjct: 67 VGRTAQAKNRHSNGQGRWPAKSAQFVLDLLK 97
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 32 LFACSLADG--HRWRRQADETRKER*KLVTRTMQGQGRRLNGSGWWP 166
LFA S DG H W+ Q+D + K V R Q + W P
Sbjct: 353 LFATSALDGAVHFWKLQSDRSTATLFKTVNRVAVDQKKWAEDIAWHP 399
>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1084
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 281 FPICRSCFSYRRPNRPGN 228
FP+CR C+ Y R R GN
Sbjct: 63 FPVCRPCYEYER--REGN 78
>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 460
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 178 CRPHRPPAGTIQPASLSLHSSCYKLSSFF 92
CRP +P A P SL H+S Y +S++
Sbjct: 399 CRPIQPGATCYNPESLEAHAS-YAFNSYY 426
>At5g18310.2 68418.m02155 expressed protein predicted proteins,
Drosophila melanogaster
Length = 167
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 196 NDVADSCRPHRPPAGTIQPASLS-LHSSCYK-LSSFFACLV 80
NDVA +C+P +P + +HSS K SF ACLV
Sbjct: 124 NDVALTCKPPKPVDEDLYKIPPEFIHSSTRKRRPSFLACLV 164
>At5g18310.1 68418.m02154 expressed protein predicted proteins,
Drosophila melanogaster
Length = 139
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 196 NDVADSCRPHRPPAGTIQPASLS-LHSSCYK-LSSFFACLV 80
NDVA +C+P +P + +HSS K SF ACLV
Sbjct: 96 NDVALTCKPPKPVDEDLYKIPPEFIHSSTRKRRPSFLACLV 136
>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1069
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 281 FPICRSCFSYRRPNRPGN 228
FP+CR C+ Y R R GN
Sbjct: 63 FPVCRPCYEYER--REGN 78
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 281 FPICRSCFSYRRPNRPGN 228
FP+CR C+ Y R R GN
Sbjct: 63 FPVCRPCYEYER--REGN 78
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 178 CRPHRPPAGTIQPASLSLHSSCYKLSSFF 92
CRP +P A P SL H+S Y +S++
Sbjct: 394 CRPIQPGATCYHPESLEAHAS-YAFNSYY 421
>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
(RPOMT) identical to SP|P92969 DNA-directed RNA
polymerase, mitochondrial precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 976
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 208 GSTLNDVADSCRPHRPPAGTIQPASLSLHSSCY 110
G T + D + GT + SL+ H+SCY
Sbjct: 761 GVTYSGARDQIKKRLKERGTFEDDSLTFHASCY 793
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,367,766
Number of Sequences: 28952
Number of extensions: 217214
Number of successful extensions: 591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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