BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0785 (426 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 116 2e-27 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 107 7e-25 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 2e-12 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 58 4e-10 SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 26 2.1 SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 4.9 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 8.6 SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 24 8.6 SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 24 8.6 SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 24 8.6 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 116 bits (279), Expect = 2e-27 Identities = 49/75 (65%), Positives = 60/75 (80%) Frame = +2 Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGK 217 MRE +S+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60 Query: 218 HVPRAVFVDLEPMLL 262 +VPR+++VDLEP ++ Sbjct: 61 YVPRSIYVDLEPNVI 75 Score = 97.5 bits (232), Expect = 8e-22 Identities = 41/57 (71%), Positives = 50/57 (87%) Frame = +1 Query: 256 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQCT 426 V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+V V D+I ++AD C+ Sbjct: 74 VIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCS 130 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 107 bits (257), Expect = 7e-25 Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%) Frame = +2 Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHS-----FNTFFSE 202 MRE +SVHVGQAGVQIGNACWELYCLEHGI PDG PT+ + ++S F TFFSE Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59 Query: 203 TGAGKHVPRAVFVDLEPMLL 262 TG GK VPR+++VDLEP ++ Sbjct: 60 TGQGKFVPRSIYVDLEPNVI 79 Score = 95.9 bits (228), Expect = 2e-21 Identities = 38/57 (66%), Positives = 51/57 (89%) Frame = +1 Query: 256 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQCT 426 V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++ VL+RI ++AD C+ Sbjct: 78 VIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCS 134 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 66.1 bits (154), Expect = 2e-12 Identities = 33/95 (34%), Positives = 54/95 (56%) Frame = +2 Query: 41 RECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGKH 220 RE +++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++ Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT-EGVDRK-DVFFYQSDDTRY 60 Query: 221 VPRAVFVDLEPMLLMRSALAHTDSCFIQNNLLLVR 325 +PRA+ +DLEP ++ S + N+L+ + Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITK 95 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 58.4 bits (135), Expect = 4e-10 Identities = 30/72 (41%), Positives = 37/72 (51%) Frame = +2 Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGK 217 MRE + + GQ G Q+G A W EHG+ G T N +F+E GK Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58 Query: 218 HVPRAVFVDLEP 253 +VPRAV VDLEP Sbjct: 59 YVPRAVLVDLEP 70 Score = 51.6 bits (118), Expect = 5e-08 Identities = 22/55 (40%), Positives = 35/55 (63%) Frame = +1 Query: 259 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQC 423 +D V++G + LF P+ +I G+ A N +A+GHYT G E+ VLD + + A+ C Sbjct: 73 MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEAC 127 >SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 506 Score = 26.2 bits (55), Expect = 2.1 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -1 Query: 270 DLINNIGSRSTKTARGTCLPAPVSLKKVLKEWSPP 166 D++ SR + + T LP P + + EW PP Sbjct: 186 DILTFNQSRYPRVHKETLLPVPHTADSAIDEWYPP 220 >SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pombe|chr 3|||Manual Length = 534 Score = 25.0 bits (52), Expect = 4.9 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 60 TLAKPESRSVMPAGSFTAWSTASSLMARCP 149 +L+ P SR++ P S + STASSL P Sbjct: 181 SLSPPSSRALKPIHSLSNPSTASSLEPSSP 210 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 24.2 bits (50), Expect = 8.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 289 VCMCQCGPHQQHRFKIDEDSTGYV 218 VC + G Q KID + TGYV Sbjct: 1877 VCNDRSGHRQSSVIKIDPNETGYV 1900 >SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosaccharomyces pombe|chr 3|||Manual Length = 592 Score = 24.2 bits (50), Expect = 8.6 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 228 RGTCLPAPVSLKKVLKEWS 172 RGT LP +L++ KEWS Sbjct: 434 RGTLLPCQSNLEEENKEWS 452 >SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 24.2 bits (50), Expect = 8.6 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 146 PTDKTIGGGDHSFNTFFSETGAGKH 220 P+D T+GGG + +++ S T G H Sbjct: 191 PSD-TVGGGAYDYSSSGSHTHGGSH 214 >SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 24.2 bits (50), Expect = 8.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 182 KNGLHPRWSCLWASGHQ 132 +NG HP WS L A+ Q Sbjct: 14 QNGAHPAWSTLGANSAQ 30 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,927,153 Number of Sequences: 5004 Number of extensions: 39559 Number of successful extensions: 133 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 152416050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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