Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0785
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 116 2e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 107 7e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 2e-12
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 58 4e-10
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 26 2.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 4.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 8.6
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 24 8.6
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 24 8.6
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 24 8.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 116 bits (279), Expect = 2e-27
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +2
Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGK 217
MRE +S+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 218 HVPRAVFVDLEPMLL 262
+VPR+++VDLEP ++
Sbjct: 61 YVPRSIYVDLEPNVI 75
Score = 97.5 bits (232), Expect = 8e-22
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 256 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQCT 426
V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+V V D+I ++AD C+
Sbjct: 74 VIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCS 130
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 107 bits (257), Expect = 7e-25
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Frame = +2
Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHS-----FNTFFSE 202
MRE +SVHVGQAGVQIGNACWELYCLEHGI PDG PT+ + ++S F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 203 TGAGKHVPRAVFVDLEPMLL 262
TG GK VPR+++VDLEP ++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVI 79
Score = 95.9 bits (228), Expect = 2e-21
Identities = 38/57 (66%), Positives = 51/57 (89%)
Frame = +1
Query: 256 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQCT 426
V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++ VL+RI ++AD C+
Sbjct: 78 VIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCS 134
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 66.1 bits (154), Expect = 2e-12
Identities = 33/95 (34%), Positives = 54/95 (56%)
Frame = +2
Query: 41 RECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGKH 220
RE +++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT-EGVDRK-DVFFYQSDDTRY 60
Query: 221 VPRAVFVDLEPMLLMRSALAHTDSCFIQNNLLLVR 325
+PRA+ +DLEP ++ S + N+L+ +
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITK 95
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 58.4 bits (135), Expect = 4e-10
Identities = 30/72 (41%), Positives = 37/72 (51%)
Frame = +2
Query: 38 MRECMSVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDHSFNTFFSETGAGK 217
MRE + + GQ G Q+G A W EHG+ G T N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 218 HVPRAVFVDLEP 253
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 51.6 bits (118), Expect = 5e-08
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 259 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYYVLDRILKLADQC 423
+D V++G + LF P+ +I G+ A N +A+GHYT G E+ VLD + + A+ C
Sbjct: 73 MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEAC 127
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 270 DLINNIGSRSTKTARGTCLPAPVSLKKVLKEWSPP 166
D++ SR + + T LP P + + EW PP
Sbjct: 186 DILTFNQSRYPRVHKETLLPVPHTADSAIDEWYPP 220
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 60 TLAKPESRSVMPAGSFTAWSTASSLMARCP 149
+L+ P SR++ P S + STASSL P
Sbjct: 181 SLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 289 VCMCQCGPHQQHRFKIDEDSTGYV 218
VC + G Q KID + TGYV
Sbjct: 1877 VCNDRSGHRQSSVIKIDPNETGYV 1900
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 228 RGTCLPAPVSLKKVLKEWS 172
RGT LP +L++ KEWS
Sbjct: 434 RGTLLPCQSNLEEENKEWS 452
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 146 PTDKTIGGGDHSFNTFFSETGAGKH 220
P+D T+GGG + +++ S T G H
Sbjct: 191 PSD-TVGGGAYDYSSSGSHTHGGSH 214
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 182 KNGLHPRWSCLWASGHQ 132
+NG HP WS L A+ Q
Sbjct: 14 QNGAHPAWSTLGANSAQ 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,153
Number of Sequences: 5004
Number of extensions: 39559
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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