Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0783
         (584 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.27 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.8  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   5.8  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   7.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 17/75 (22%), Positives = 30/75 (40%)
 Frame = -3

Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
           G++ E R     +PG   T EQ  + +       PTQ  +++   E S     + + VQ 
Sbjct: 393 GSQEESRVLDLSKPGCSYTGEQKSRRKGPAFKVDPTQVESEEEDEETSTTVFSNVEVVQE 452

Query: 120 NESRHSDLTNTSTIK 76
              +    +N +  K
Sbjct: 453 EAKKEESDSNNNNNK 467


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 583 YGQRFAESQKNQI 545
           YG+R + S++NQI
Sbjct: 450 YGRRLSNSERNQI 462


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 206 PSRFLRAFSIC 238
           P RF+R F+IC
Sbjct: 93  PDRFVRQFTIC 103


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 234 IEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
           +EK +   EG +  ++I     +E +   EKH++ V++
Sbjct: 47  LEKGKCTPEGEELKKDIPDALQNECAKCNEKHKEGVRK 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,089
Number of Sequences: 336
Number of extensions: 2737
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)