Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0783
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 36 0.003
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.22
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 30 0.22
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 2.0
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 2.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.7
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 2.7
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 3.5
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 26 4.7
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 4.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.7
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 4.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 4.7
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 6.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 6.2
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 6.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 8.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.1
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.1
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 25 8.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 8.1
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -3
Query: 297 NENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNIN-KKSMSEKSIAEEKHED 133
N+ +Q T SK + + A +++G +PT N+N KK++++KS E+ ED
Sbjct: 206 NKEQQEKTQSKRGAAAPAAKPVSTAAPSKKGGKPTVNVNSKKTVADKSAYEDYIED 261
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = -3
Query: 276 TASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDL 97
++S ++ ++ +N + Q+I K S + ++KH+ F R++ ++
Sbjct: 1152 SSSAVRAAMKADKIFPAVHENPPPLKTKQSIAKPSPHTLRVPQKKHKHFYHRDDGKYKSG 1211
Query: 96 TNTSTIKTNFENSFYNDEN 40
TN +T F+ DEN
Sbjct: 1212 TNLRKSETVDLPQFFIDEN 1230
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 198 PTQNINKKSMSEKSIAEEKHEDFVQRNE 115
P N N+KS +E SI E+K+ D ++NE
Sbjct: 180 PISNENEKSAAETSIKEDKNGDAAKKNE 207
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 243 EEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTI 79
E IEKARK + + +N N K + + ++ E ++ NES+ + T+ I
Sbjct: 132 ESNIEKARKAIDDFY--ENFNDKRDKVIAKSRKEQEKLLEENESKSTGTTSWERI 184
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 34 FTVLIIVKTILKVSLYGTRIGQIRMT*FVSLY 129
FTV + +K I LY R+GQ R+T + L+
Sbjct: 834 FTVFLDLKGIENSELYDVRMGQYRLTKCILLW 865
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 125 CTKSSCFSSAMDFSDILFLFI--FCVGWYPSRFLRAFSICSSVCIV 256
C K +A+ +F+FI F V WY + A ++ S +CI+
Sbjct: 1670 CKKFGAVLAALAHGITVFMFIIVFEVSWYLEAWCLAKTVLSMLCII 1715
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 149 SAMDFSDILFLFIFCVGWYPSRFLRAFSICSSVCIVPGSLLAVYR 283
SA+ +L+ FI+ W+ R+L+ FS+ S I+ + +Y+
Sbjct: 512 SAITSFSVLWDFIYETSWHIERWLKVFSVQSEFYILKLIIQRLYQ 556
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 548 NHSGSSDGTTAEEKWKACHCGSTE 477
N S SSD + +EEK A H ST+
Sbjct: 5 NSSTSSDSSNSEEKANAQHASSTD 28
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Frame = +2
Query: 149 SAMDFSDILFLFIFCVGWYPSRF--------LRAFSICSSVCIVPGSLLAVYRCSFSFPF 304
S M LFLF +C W P + +R S C+SV G+ L + SF PF
Sbjct: 366 SVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVA-TSGNWLGNFMISFFTPF 424
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 288 EQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKH 139
EQ+ S+E ++++ E I +N+E T + +KS KH
Sbjct: 228 EQKKLLSEEEESLKSVESIISNLENKESTTATSTLTDAGFGDKSSTAGKH 277
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 170 ILFLFIF-CVGWYPSRFLRAFSICSSVCIVPGSLLAVYRCSFSFPFYQWFLLNDVECFL 343
++FL + C +FL+ F VC++ G +L + S +W N + C+L
Sbjct: 268 VVFLHLLPCERTSFKKFLKTFDFIGLVCVITGIVLILLGISLGASSGKWRRAN-ILCYL 325
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -1
Query: 410 PAPEVPETRKQAIPEKIQTPAVQENI-QHRSKET 312
P+ +VPE +++ + +++TP +E++ +H K++
Sbjct: 134 PSFDVPEEKEEEVEVEVKTPNAREDVTKHSGKKS 167
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 397 TSGAGLSSFFILTKSFFLNSGTVVNNISVLPQ*HAFHFSSAVVPSELP 540
TS + L+S +T S LNS T V + SVL SS VV S P
Sbjct: 3337 TSSSVLNSSTAITSSSILNSSTPVTSSSVLNSSTPI-TSSTVVNSSTP 3383
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.7
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -3
Query: 297 NENEQRYTASKEPGT---IQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFV 127
N+ E + S+E T I++E++ E K +EG T+ + + S S+ +D
Sbjct: 197 NKEEDKEIHSEENETKDEIKSEKK-EPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQP 255
Query: 126 QRNESRHSDLTNTSTIKTNFENS 58
E + SD+ + IKT + S
Sbjct: 256 SEEEEKTSDIQDRK-IKTPIKPS 277
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -3
Query: 240 EQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNFEN 61
+++ K E QP+ +N+ +E E+ ED + + H D N +I +
Sbjct: 521 QRVLKQNMTPEPSQPSPLVNRLKANEMHPVSEEPEDNREVYRNEHGDHFNFRSIPGLLKP 580
Query: 60 SFYND--ENGEGFVMKTVKKK 4
S Y +G+ FV KK
Sbjct: 581 STYGSFKHHGKTFVTPPHIKK 601
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 249 VSSQAPCLPYTVVHFHFLSINGFF*TMLNVFLDSRRLN 362
+ Q CLPY + LSIN F + ++ D+ N
Sbjct: 890 IGQQHGCLPYVIALVSALSINQLFVSKQSLLYDAHDKN 927
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 564 KVKRTKSFWKFGRDYRRGKME 502
KV RT+ F++F +D R+G E
Sbjct: 208 KVNRTRDFYQFLKDMRKGFRE 228
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 264 EPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSD 100
E GT + Q + N + PT +IN K+ SE + + +RN +D
Sbjct: 418 ENGTDYSTSQEPSSNANNQS-SPTSSINGKASSESANGTSYSKGSSRRNSKNETD 471
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 123 RNESRHSDLTNTSTIKTNFEN--SFYNDENGEGFVMKTVKK 7
++ +RH +L N ST+K+ + S Y +EN E + +K+
Sbjct: 823 KSAARHEELKNLSTLKSLAKEFLSNYKEENLENSTLVQLKQ 863
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAE 148
E E + S++ T T ++ E KN + T+N N S+S KSI +
Sbjct: 685 EYETSTSESEDEETDDTSQE-EDNEKNSTPDEDTENNNTSSISTKSIMD 732
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -3
Query: 246 TEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHS 103
T+++ +KAR NRE + + + +++ ++ I E D + + E + S
Sbjct: 46 TKDRNDKARLNRENARMRKKVIEENRKKEEIEERILTDRILQQERKKS 93
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 8.1
Identities = 6/11 (54%), Positives = 11/11 (100%)
Frame = +3
Query: 270 LPYTVVHFHFL 302
+PY+++HFH+L
Sbjct: 718 IPYSIIHFHYL 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,580
Number of Sequences: 5004
Number of extensions: 46902
Number of successful extensions: 213
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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