Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0783
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 33 0.13
09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614... 32 0.29
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 32 0.39
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 30 1.6
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 29 2.1
01_06_1592 + 38495121-38495305,38496378-38496459,38496652-384967... 29 2.1
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267... 29 2.7
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 4.8
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 6.3
06_01_0046 + 425064-425296,426278-426327,426607-426696,426778-42... 28 6.3
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 28 6.3
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 404 PEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNGIRQ 270
PE+P+ K+ ++ + EN+Q + T+ KE + N G R+
Sbjct: 141 PEIPDITKEIAVDEARNRVAAENVQRQESYTLSLKERQTNKGSRK 185
>09_04_0726 +
19758916-19759098,19759774-19760318,19760581-19761492,
19762067-19762328
Length = 633
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = -3
Query: 291 NEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSI 154
NEQ+++ +K+PG E +K++K ++ + + ++ KS EKS+
Sbjct: 74 NEQKHSVNKKPGNAVPETN-KKSKKKKKKSKADKQVSTKSRDEKSL 118
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -3
Query: 285 QRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHED 133
Q+ T++ E T + ++Q+EK K +E + +K E+++ E+K +
Sbjct: 324 QKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRRE 374
>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 270 SKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDL-T 94
S PG +T+ KA + Y PT N + +E+ E H D ++ DL
Sbjct: 1049 SGSPGN-ETDNGSFKALEFELNYLPTVNDERGKQAEEDKCPEVHSDAASEKSNQGDDLCK 1107
Query: 93 NTSTIK 76
N ST+K
Sbjct: 1108 NLSTVK 1113
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -3
Query: 279 YTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSD 100
YT ++ T++ EE+ K EG + T+ KK +K EK+ D+ NE++
Sbjct: 302 YTWQEKSRTVEVEEEEPK-----EGEEATEGEKKK---KKKTITEKYWDWELANETKPIW 353
Query: 99 LTNTSTIKTNFENSFY 52
+ N ++ N FY
Sbjct: 354 MRNPKEVEKTEYNEFY 369
>01_06_1592 +
38495121-38495305,38496378-38496459,38496652-38496716,
38496914-38497013,38497300-38497341,38497486-38497527,
38497651-38497932
Length = 265
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 279 YTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRH 106
Y S T T E+ +KA + G P ++N ++ A+ +H+ +N +RH
Sbjct: 55 YEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRH 112
>03_05_0829 +
28025760-28025846,28026366-28026473,28026721-28026752,
28026823-28026873,28027528-28027589,28027663-28027924,
28028634-28028899,28029138-28029232,28029772-28029948
Length = 379
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 263 SLLAVYRCSFSFPFYQWFLLNDVECFLGQQAFEF 364
SL + CSF F F WFLL E + Q F +
Sbjct: 193 SLYYIAPCSFIFLFVPWFLLEKPEMDVSQIQFNY 226
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -3
Query: 291 NEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNES 112
++Q A+ +P Q+ E + A QP +N K + SE+ + E +HE + + +
Sbjct: 856 SDQILEANTDPAADQSSESQDVAPAKVATEQPLEN-QKAAASEQPL-EPQHEAYEENPQE 913
Query: 111 RHSDLT 94
+SD T
Sbjct: 914 HNSDAT 919
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -3
Query: 303 KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQ 124
K E E+ KE +TE+ EK ++++E + T+ N+K + +EK ++ +
Sbjct: 196 KEEETEKDNEKEKEDKEEETEKDNEKEKEDKE--EETKKDNEKEKEQLMGTDEKEKEKEK 253
Query: 123 RNESRHSDL 97
+E+ L
Sbjct: 254 EDENEEEKL 262
>06_01_0046 +
425064-425296,426278-426327,426607-426696,426778-426840,
427524-427583,428135-428194,428654-428713,429273-429347,
429559-429602
Length = 244
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -3
Query: 243 EEQIEKARKNREGYQPTQ--NINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTN 70
EE+ E+ + R P Q N+N K +S+ S K +D + S+ D+T + +
Sbjct: 60 EEKQEEGKIKRNKKAPVQSFNLNFKMISDFS---SKKQD----SSSKEQDITTSKLVHVQ 112
Query: 69 FENSFYNDENGEGFVMKTVKKK 4
N F + + +GF K+K
Sbjct: 113 KPNEFISMKTSKGFKGNKEKEK 134
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/80 (17%), Positives = 41/80 (51%)
Frame = -3
Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115
+N+ +++++ G + + + + A+ + T+ + +++ + + + E Q NE
Sbjct: 513 DNKDSKSSTRQTGPVTEQNEPDSAKMTMQ----TEPVAQRNEPDSAKVTMQTESVAQPNE 568
Query: 114 SRHSDLTNTSTIKTNFENSF 55
+ + +T + I+ FE+SF
Sbjct: 569 ADSAKVTARNVIRNPFESSF 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,370
Number of Sequences: 37544
Number of extensions: 269393
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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