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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0783
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42320.1 68415.m05238 nucleolar protein gar2-related contains...    31   0.57 
At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 ...    29   1.7  
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1...    29   1.7  
At1g17665.1 68414.m02187 expressed protein                             29   1.7  
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    29   1.7  
At5g48610.1 68418.m06012 expressed protein ; expression supporte...    29   2.3  
At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ...    29   2.3  
At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putativ...    29   2.3  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    29   2.3  
At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote...    29   3.0  
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    29   3.0  
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    28   4.0  
At2g48160.1 68415.m06031 PWWP domain-containing protein                28   4.0  
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2...    28   5.3  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    28   5.3  
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049...    27   7.0  
At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 famil...    27   7.0  
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    27   7.0  
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea...    27   9.2  
At3g51070.1 68416.m05592 dehydration-responsive protein-related ...    27   9.2  
At2g22795.1 68415.m02704 expressed protein                             27   9.2  

>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
           weak similarity to Swiss-Prot:P41891 protein gar2
           [Schizosaccharomyces pombe]
          Length = 669

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = -3

Query: 249 QTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRH-SDLTNTSTIKT 73
           +T   + +++++ +  +  Q + K + S+K   +EKH+D   + ES + S + + STI++
Sbjct: 4   RTTNNVVQSKRSTKSVRKDQKLQKTN-SQKKTEQEKHKDLDTKEESSNISTVASDSTIQS 62

Query: 72  NFENSF 55
           +   S+
Sbjct: 63  DPSESY 68


>At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1
           (PGIP1) identical to polygalacturonase inhibiting
           protein 1 (PGIP1) [Arabidopsis thaliana]
           gi|7800199|gb|AAF69827; contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
          Length = 330

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 412 LSSFFILTKSFFLNSGTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSF 558
           L +   L  SF   SG++ +++S LP+  A   S   +   +PE FGSF
Sbjct: 142 LKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSF 190


>At1g27900.1 68414.m03419 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 700

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 410 PAP--EVPETRKQAIPEKIQTPAVQENIQHRSKETIDR 303
           PAP  +VPE + +      +TPAV EN++ R +   +R
Sbjct: 655 PAPSFKVPEEKTELSKNNAETPAVSENVESRIEAARER 692


>At1g17665.1 68414.m02187 expressed protein
          Length = 338

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 177 KSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNFENSFYNDENGEGFVMKTVKKKK 1
           K   E S++E   E   Q +E+  + LTN+   +    +   +D + EG  +K  KKKK
Sbjct: 62  KLQPESSLSEISDEAQYQTHENEPTHLTNSRLYELLLSDKKEDDSDWEGDHVKKKKKKK 120


>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 297 NENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRN 118
           +E      A+KE  T +++E+  +A  N+E      ++ K   +E ++AEEK  D    +
Sbjct: 306 DEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKK---TEAAVAEEKSNDMKAED 362

Query: 117 ESR 109
            +R
Sbjct: 363 TNR 365


>At5g48610.1 68418.m06012 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = -3

Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
           G E + +Y   K     +  E  EK  K+R   +  +   KK   +    +EK ++  + 
Sbjct: 8   GFEFQDKYKEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKP 67

Query: 120 NESRHSDL-TNTSTIKTNFENSFYNDENGEGFVMKTVKKK 4
            E + ++L TN    +    ++  N+ NGE   ++ + ++
Sbjct: 68  LEEKKAELLTNAGHRENRVTDTVQNNSNGESKYVQDLARR 107


>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
            proton pump, putative strong similarity to P-type
            H(+)-transporting ATPase from [Phaseolus vulgaris]
            GI:758250, [Lycopersicon esculentum] GI:1621440,
            SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
            tuberosum] GI:435001; contains InterPro accession
            IPR001757: ATPase, E1-E2 type
          Length = 931

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 294  ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNIN----KKSMSEKS-IAEE 145
            EN+  +T  K+ G  + E Q   A++   G QP +  N    K S SE S IAE+
Sbjct: 837  ENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQ 891


>At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putative /
            proton pump 9, putative / proton-exporting ATPase,
            putative strong similarity to SP|Q42556 ATPase 9, plasma
            membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis
            thaliana}; contains InterPro accession IPR001757: ATPase,
            E1-E2 type
          Length = 954

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = -3

Query: 294  ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQN---INKKSMSEK--SIAEE-KHED 133
            EN+  +T+ K+ G  + E Q  +A++   G QP Q     N KS   +   IA++ K   
Sbjct: 860  ENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRA 919

Query: 132  FVQRNESRHS 103
             V R   RH+
Sbjct: 920  EVARLRERHT 929


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279
           P PE PE ++Q + E    P  Q   QH    TI   +   N+G
Sbjct: 659 PLPEEPEPKRQKLDESALVPEDQFLAQHPGPATIRVSKPNENDG 702


>At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           tomato, PIR:T07865
          Length = 659

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 457 GTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSFDFLRI 573
           G++ ++I+ LPQ    H  S  +  E+P  FGS   L++
Sbjct: 158 GSIPSSITQLPQLEELHMQSNNLTGEIPPEFGSMKNLKV 196


>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279
           P PE PE ++Q   E    P  Q   QH    TI   +   N+G
Sbjct: 672 PLPEEPEAKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG 715


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 303 KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINK-KSMSEKSIAEEKHEDFV 127
           K  E ++    S++  + +     E+ R +R+  +  +   + K  S +S  EEK  + V
Sbjct: 86  KDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVV 145

Query: 126 QRNESRHSD 100
           +R   RH D
Sbjct: 146 ERGSRRHRD 154


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -3

Query: 270 SKEPGTIQTEEQIEKARKNREGYQPTQNI-----NKKSMSEKSIAEEKHEDFVQRNESRH 106
           SK P  +QTE+      +N +G Q   ++      ++    +S    + +D    + + H
Sbjct: 230 SKSPSRLQTEKLQSSMLQNSDGGQTIDDVEDGALRREKRIRRSSGHSESDDVATSSLNSH 289

Query: 105 -SDLTNTSTIKTNFENSFYNDENG 37
            SD  N S I T   ++  N+ NG
Sbjct: 290 GSDEENASEIATVESDNNRNEGNG 313


>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
           protein-related contains weak hit to Pfam profile
           PF05477: Surfeit locus protein 2 (SURF2)
          Length = 291

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 276 TASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHED 133
           T +KE G ++ E++ +K +KN +  +  +++ KK   E    E +HE+
Sbjct: 131 TPAKENG-VEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVADEIEHEN 177


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -3

Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115
           + E+     +E    + EE+ E+ARK  E  +  + + KK   E+   E +  +  +R E
Sbjct: 493 KREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREE 552


>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
           At3g47270, At2g02200
          Length = 800

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 342 RKHSTSF--KRNH**KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSM 169
           ++ S SF  KR    +G + EQ     +E G    EE++EK     +     Q I K+  
Sbjct: 364 KRKSMSFGEKRRTKRRGRKKEQEEEKQEEEGK---EEELEKVEYRGDEGTEKQEIPKQGD 420

Query: 168 SEKSIAEEKHED 133
            E    EEK E+
Sbjct: 421 EEMEGEEEKQEE 432


>At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 family
           protein contains Pfam PF05179: RNA pol II accessory
           factor, Cdc73 family
          Length = 415

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 282 RYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115
           R  +S     +  ++Q  +++K  E Y+P Q+ +     E +IA+ + EDF +  E
Sbjct: 96  RVASSDSIDFLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIADMEVEDFGKSGE 151


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 273 ASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR-NESRHSDL 97
           ASK  GT++  +++EK ++N++         KK      +A +++  +V +  +  H DL
Sbjct: 115 ASKSEGTLKKTDKVEKKQENKK--------KKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 166

Query: 96  TNTSTIKTNFENSFYND 46
             TS   T   N F  D
Sbjct: 167 GITSKAMT-VVNMFMGD 182


>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
           family protein similar to TUPA (GI:11066216) [Emericella
           nidulans]; similar to damage-specific DNA binding
           protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
           PF00400: WD domain, G-beta repeat (3 copies,1
           weak)|19797453|gb|AU229277.1|AU229277
          Length = 783

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 207 LHDFYGL-FQFVLRFVSSQAPCLPYTVVHFHFLSINGFF*TMLNVFLDSRRLNFLRYSLF 383
           LHD +G  F   + F       L    +H H L+I G F  +  + LD  R+       F
Sbjct: 109 LHDSFGKNFWQDVFFQGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDKNRIVGFGEDCF 168

Query: 384 SCFGNL 401
           SC   L
Sbjct: 169 SCMPKL 174


>At3g51070.1 68416.m05592 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 895

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -3

Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
           G +NE++ TAS+E G      + EK+ K+  G Q      ++    K       ++ +++
Sbjct: 254 GQQNEEKTTASEENG------KGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQ 307

Query: 120 NESRHSD 100
            E R  +
Sbjct: 308 QEERKDE 314


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -3

Query: 246 TEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNF 67
           TEE   + RK   G +     N+KS SE+S  EEK +D     ESR    T  S ++   
Sbjct: 204 TEESEVEERKENGGTEE----NEKSGSEESEVEEK-KDNGGTEESREKSGTEESEVEEKK 258

Query: 66  EN 61
           +N
Sbjct: 259 DN 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,749
Number of Sequences: 28952
Number of extensions: 234980
Number of successful extensions: 839
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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