Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0783
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains... 31 0.57
At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 ... 29 1.7
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 1.7
At1g17665.1 68414.m02187 expressed protein 29 1.7
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 29 1.7
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 29 2.3
At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ... 29 2.3
At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putativ... 29 2.3
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 29 2.3
At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote... 29 3.0
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 29 3.0
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 4.0
At2g48160.1 68415.m06031 PWWP domain-containing protein 28 4.0
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 28 5.3
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 5.3
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 27 7.0
At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 famil... 27 7.0
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 27 7.0
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 27 9.2
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 27 9.2
At2g22795.1 68415.m02704 expressed protein 27 9.2
>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
weak similarity to Swiss-Prot:P41891 protein gar2
[Schizosaccharomyces pombe]
Length = 669
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -3
Query: 249 QTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRH-SDLTNTSTIKT 73
+T + +++++ + + Q + K + S+K +EKH+D + ES + S + + STI++
Sbjct: 4 RTTNNVVQSKRSTKSVRKDQKLQKTN-SQKKTEQEKHKDLDTKEESSNISTVASDSTIQS 62
Query: 72 NFENSF 55
+ S+
Sbjct: 63 DPSESY 68
>At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1
(PGIP1) identical to polygalacturonase inhibiting
protein 1 (PGIP1) [Arabidopsis thaliana]
gi|7800199|gb|AAF69827; contains leucine rich-repeat
(LRR) domains Pfam:PF00560, INTERPRO:IPR001611
Length = 330
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 412 LSSFFILTKSFFLNSGTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSF 558
L + L SF SG++ +++S LP+ A S + +PE FGSF
Sbjct: 142 LKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSF 190
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 410 PAP--EVPETRKQAIPEKIQTPAVQENIQHRSKETIDR 303
PAP +VPE + + +TPAV EN++ R + +R
Sbjct: 655 PAPSFKVPEEKTELSKNNAETPAVSENVESRIEAARER 692
>At1g17665.1 68414.m02187 expressed protein
Length = 338
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 177 KSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNFENSFYNDENGEGFVMKTVKKKK 1
K E S++E E Q +E+ + LTN+ + + +D + EG +K KKKK
Sbjct: 62 KLQPESSLSEISDEAQYQTHENEPTHLTNSRLYELLLSDKKEDDSDWEGDHVKKKKKKK 120
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -3
Query: 297 NENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRN 118
+E A+KE T +++E+ +A N+E ++ K +E ++AEEK D +
Sbjct: 306 DEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKK---TEAAVAEEKSNDMKAED 362
Query: 117 ESR 109
+R
Sbjct: 363 TNR 365
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -3
Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
G E + +Y K + E EK K+R + + KK + +EK ++ +
Sbjct: 8 GFEFQDKYKEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKP 67
Query: 120 NESRHSDL-TNTSTIKTNFENSFYNDENGEGFVMKTVKKK 4
E + ++L TN + ++ N+ NGE ++ + ++
Sbjct: 68 LEEKKAELLTNAGHRENRVTDTVQNNSNGESKYVQDLARR 107
>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 931
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNIN----KKSMSEKS-IAEE 145
EN+ +T K+ G + E Q A++ G QP + N K S SE S IAE+
Sbjct: 837 ENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQ 891
>At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putative /
proton pump 9, putative / proton-exporting ATPase,
putative strong similarity to SP|Q42556 ATPase 9, plasma
membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis
thaliana}; contains InterPro accession IPR001757: ATPase,
E1-E2 type
Length = 954
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -3
Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQN---INKKSMSEK--SIAEE-KHED 133
EN+ +T+ K+ G + E Q +A++ G QP Q N KS + IA++ K
Sbjct: 860 ENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRA 919
Query: 132 FVQRNESRHS 103
V R RH+
Sbjct: 920 EVARLRERHT 929
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279
P PE PE ++Q + E P Q QH TI + N+G
Sbjct: 659 PLPEEPEPKRQKLDESALVPEDQFLAQHPGPATIRVSKPNENDG 702
>At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
tomato, PIR:T07865
Length = 659
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 457 GTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSFDFLRI 573
G++ ++I+ LPQ H S + E+P FGS L++
Sbjct: 158 GSIPSSITQLPQLEELHMQSNNLTGEIPPEFGSMKNLKV 196
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279
P PE PE ++Q E P Q QH TI + N+G
Sbjct: 672 PLPEEPEAKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG 715
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 303 KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINK-KSMSEKSIAEEKHEDFV 127
K E ++ S++ + + E+ R +R+ + + + K S +S EEK + V
Sbjct: 86 KDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVV 145
Query: 126 QRNESRHSD 100
+R RH D
Sbjct: 146 ERGSRRHRD 154
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = -3
Query: 270 SKEPGTIQTEEQIEKARKNREGYQPTQNI-----NKKSMSEKSIAEEKHEDFVQRNESRH 106
SK P +QTE+ +N +G Q ++ ++ +S + +D + + H
Sbjct: 230 SKSPSRLQTEKLQSSMLQNSDGGQTIDDVEDGALRREKRIRRSSGHSESDDVATSSLNSH 289
Query: 105 -SDLTNTSTIKTNFENSFYNDENG 37
SD N S I T ++ N+ NG
Sbjct: 290 GSDEENASEIATVESDNNRNEGNG 313
>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
protein-related contains weak hit to Pfam profile
PF05477: Surfeit locus protein 2 (SURF2)
Length = 291
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -3
Query: 276 TASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHED 133
T +KE G ++ E++ +K +KN + + +++ KK E E +HE+
Sbjct: 131 TPAKENG-VEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVADEIEHEN 177
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -3
Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115
+ E+ +E + EE+ E+ARK E + + + KK E+ E + + +R E
Sbjct: 493 KREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREE 552
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 27.5 bits (58), Expect = 7.0
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 342 RKHSTSF--KRNH**KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSM 169
++ S SF KR +G + EQ +E G EE++EK + Q I K+
Sbjct: 364 KRKSMSFGEKRRTKRRGRKKEQEEEKQEEEGK---EEELEKVEYRGDEGTEKQEIPKQGD 420
Query: 168 SEKSIAEEKHED 133
E EEK E+
Sbjct: 421 EEMEGEEEKQEE 432
>At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 family
protein contains Pfam PF05179: RNA pol II accessory
factor, Cdc73 family
Length = 415
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 282 RYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115
R +S + ++Q +++K E Y+P Q+ + E +IA+ + EDF + E
Sbjct: 96 RVASSDSIDFLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIADMEVEDFGKSGE 151
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 273 ASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR-NESRHSDL 97
ASK GT++ +++EK ++N++ KK +A +++ +V + + H DL
Sbjct: 115 ASKSEGTLKKTDKVEKKQENKK--------KKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 166
Query: 96 TNTSTIKTNFENSFYND 46
TS T N F D
Sbjct: 167 GITSKAMT-VVNMFMGD 182
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 207 LHDFYGL-FQFVLRFVSSQAPCLPYTVVHFHFLSINGFF*TMLNVFLDSRRLNFLRYSLF 383
LHD +G F + F L +H H L+I G F + + LD R+ F
Sbjct: 109 LHDSFGKNFWQDVFFQGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDKNRIVGFGEDCF 168
Query: 384 SCFGNL 401
SC L
Sbjct: 169 SCMPKL 174
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = -3
Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121
G +NE++ TAS+E G + EK+ K+ G Q ++ K ++ +++
Sbjct: 254 GQQNEEKTTASEENG------KGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQ 307
Query: 120 NESRHSD 100
E R +
Sbjct: 308 QEERKDE 314
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = -3
Query: 246 TEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNF 67
TEE + RK G + N+KS SE+S EEK +D ESR T S ++
Sbjct: 204 TEESEVEERKENGGTEE----NEKSGSEESEVEEK-KDNGGTEESREKSGTEESEVEEKK 258
Query: 66 EN 61
+N
Sbjct: 259 DN 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,749
Number of Sequences: 28952
Number of extensions: 234980
Number of successful extensions: 839
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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