BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0783 (584 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g42320.1 68415.m05238 nucleolar protein gar2-related contains... 31 0.57 At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 ... 29 1.7 At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 1.7 At1g17665.1 68414.m02187 expressed protein 29 1.7 At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 29 1.7 At5g48610.1 68418.m06012 expressed protein ; expression supporte... 29 2.3 At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ... 29 2.3 At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putativ... 29 2.3 At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 29 2.3 At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote... 29 3.0 At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 29 3.0 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 4.0 At2g48160.1 68415.m06031 PWWP domain-containing protein 28 4.0 At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 28 5.3 At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 5.3 At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 27 7.0 At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 famil... 27 7.0 At1g08170.1 68414.m00902 histone H2B family protein similar to h... 27 7.0 At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 27 9.2 At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 27 9.2 At2g22795.1 68415.m02704 expressed protein 27 9.2 >At2g42320.1 68415.m05238 nucleolar protein gar2-related contains weak similarity to Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces pombe] Length = 669 Score = 31.1 bits (67), Expect = 0.57 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = -3 Query: 249 QTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRH-SDLTNTSTIKT 73 +T + +++++ + + Q + K + S+K +EKH+D + ES + S + + STI++ Sbjct: 4 RTTNNVVQSKRSTKSVRKDQKLQKTN-SQKKTEQEKHKDLDTKEESSNISTVASDSTIQS 62 Query: 72 NFENSF 55 + S+ Sbjct: 63 DPSESY 68 >At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 (PGIP1) identical to polygalacturonase inhibiting protein 1 (PGIP1) [Arabidopsis thaliana] gi|7800199|gb|AAF69827; contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611 Length = 330 Score = 29.5 bits (63), Expect = 1.7 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 412 LSSFFILTKSFFLNSGTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSF 558 L + L SF SG++ +++S LP+ A S + +PE FGSF Sbjct: 142 LKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSF 190 >At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 700 Score = 29.5 bits (63), Expect = 1.7 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -1 Query: 410 PAP--EVPETRKQAIPEKIQTPAVQENIQHRSKETIDR 303 PAP +VPE + + +TPAV EN++ R + +R Sbjct: 655 PAPSFKVPEEKTELSKNNAETPAVSENVESRIEAARER 692 >At1g17665.1 68414.m02187 expressed protein Length = 338 Score = 29.5 bits (63), Expect = 1.7 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = -3 Query: 177 KSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNFENSFYNDENGEGFVMKTVKKKK 1 K E S++E E Q +E+ + LTN+ + + +D + EG +K KKKK Sbjct: 62 KLQPESSLSEISDEAQYQTHENEPTHLTNSRLYELLLSDKKEDDSDWEGDHVKKKKKKK 120 >At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing protein contains Pfam profile PF01429: Methyl-CpG binding domain Length = 384 Score = 29.5 bits (63), Expect = 1.7 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = -3 Query: 297 NENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRN 118 +E A+KE T +++E+ +A N+E ++ K +E ++AEEK D + Sbjct: 306 DEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKK---TEAAVAEEKSNDMKAED 362 Query: 117 ESR 109 +R Sbjct: 363 TNR 365 >At5g48610.1 68418.m06012 expressed protein ; expression supported by MPSS Length = 470 Score = 29.1 bits (62), Expect = 2.3 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = -3 Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121 G E + +Y K + E EK K+R + + KK + +EK ++ + Sbjct: 8 GFEFQDKYKEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKP 67 Query: 120 NESRHSDL-TNTSTIKTNFENSFYNDENGEGFVMKTVKKK 4 E + ++L TN + ++ N+ NGE ++ + ++ Sbjct: 68 LEEKKAELLTNAGHRENRVTDTVQNNSNGESKYVQDLARR 107 >At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative / proton pump, putative strong similarity to P-type H(+)-transporting ATPase from [Phaseolus vulgaris] GI:758250, [Lycopersicon esculentum] GI:1621440, SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum tuberosum] GI:435001; contains InterPro accession IPR001757: ATPase, E1-E2 type Length = 931 Score = 29.1 bits (62), Expect = 2.3 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = -3 Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNIN----KKSMSEKS-IAEE 145 EN+ +T K+ G + E Q A++ G QP + N K S SE S IAE+ Sbjct: 837 ENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQ 891 >At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putative / proton pump 9, putative / proton-exporting ATPase, putative strong similarity to SP|Q42556 ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type Length = 954 Score = 29.1 bits (62), Expect = 2.3 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Frame = -3 Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQN---INKKSMSEK--SIAEE-KHED 133 EN+ +T+ K+ G + E Q +A++ G QP Q N KS + IA++ K Sbjct: 860 ENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRA 919 Query: 132 FVQRNESRHS 103 V R RH+ Sbjct: 920 EVARLRERHT 929 >At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein similar to human splicing factor GB:CAA59494 GI:899298 from [Homo sapiens]; contains Pfam profile PF01805: Surp module Length = 735 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -1 Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279 P PE PE ++Q + E P Q QH TI + N+G Sbjct: 659 PLPEEPEPKRQKLDESALVPEDQFLAQHPGPATIRVSKPNENDG 702 >At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase PRK1, tomato, PIR:T07865 Length = 659 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 457 GTVVNNISVLPQ*HAFHFSSAVVPSELPE*FGSFDFLRI 573 G++ ++I+ LPQ H S + E+P FGS L++ Sbjct: 158 GSIPSSITQLPQLEELHMQSNNLTGEIPPEFGSMKNLKV 196 >At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein similar to SP|Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module Length = 785 Score = 28.7 bits (61), Expect = 3.0 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -1 Query: 410 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 279 P PE PE ++Q E P Q QH TI + N+G Sbjct: 672 PLPEEPEAKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG 715 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 28.3 bits (60), Expect = 4.0 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = -3 Query: 303 KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINK-KSMSEKSIAEEKHEDFV 127 K E ++ S++ + + E+ R +R+ + + + K S +S EEK + V Sbjct: 86 KDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVV 145 Query: 126 QRNESRHSD 100 +R RH D Sbjct: 146 ERGSRRHRD 154 >At2g48160.1 68415.m06031 PWWP domain-containing protein Length = 1366 Score = 28.3 bits (60), Expect = 4.0 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Frame = -3 Query: 270 SKEPGTIQTEEQIEKARKNREGYQPTQNI-----NKKSMSEKSIAEEKHEDFVQRNESRH 106 SK P +QTE+ +N +G Q ++ ++ +S + +D + + H Sbjct: 230 SKSPSRLQTEKLQSSMLQNSDGGQTIDDVEDGALRREKRIRRSSGHSESDDVATSSLNSH 289 Query: 105 -SDLTNTSTIKTNFENSFYNDENG 37 SD N S I T ++ N+ NG Sbjct: 290 GSDEENASEIATVESDNNRNEGNG 313 >At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2 protein-related contains weak hit to Pfam profile PF05477: Surfeit locus protein 2 (SURF2) Length = 291 Score = 27.9 bits (59), Expect = 5.3 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = -3 Query: 276 TASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHED 133 T +KE G ++ E++ +K +KN + + +++ KK E E +HE+ Sbjct: 131 TPAKENG-VEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVADEIEHEN 177 >At2g18540.1 68415.m02160 cupin family protein contains Pfam profile PF00190: Cupin Length = 707 Score = 27.9 bits (59), Expect = 5.3 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -3 Query: 294 ENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115 + E+ +E + EE+ E+ARK E + + + KK E+ E + + +R E Sbjct: 493 KREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREE 552 >At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970, At2g15200, At1g32830, At2g14140, At4g03990, At5g34895, At3g47270, At2g02200 Length = 800 Score = 27.5 bits (58), Expect = 7.0 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 342 RKHSTSF--KRNH**KGNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSM 169 ++ S SF KR +G + EQ +E G EE++EK + Q I K+ Sbjct: 364 KRKSMSFGEKRRTKRRGRKKEQEEEKQEEEGK---EEELEKVEYRGDEGTEKQEIPKQGD 420 Query: 168 SEKSIAEEKHED 133 E EEK E+ Sbjct: 421 EEMEGEEEKQEE 432 >At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 family protein contains Pfam PF05179: RNA pol II accessory factor, Cdc73 family Length = 415 Score = 27.5 bits (58), Expect = 7.0 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 282 RYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 115 R +S + ++Q +++K E Y+P Q+ + E +IA+ + EDF + E Sbjct: 96 RVASSDSIDFLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIADMEVEDFGKSGE 151 >At1g08170.1 68414.m00902 histone H2B family protein similar to histone H2B from Chlamydomonas reinhardtii [SP|P54347, SP|P54346, SP|P50565], Volvox carteri [SP|P16867, SP|P16868]; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 Length = 243 Score = 27.5 bits (58), Expect = 7.0 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -3 Query: 273 ASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR-NESRHSDL 97 ASK GT++ +++EK ++N++ KK +A +++ +V + + H DL Sbjct: 115 ASKSEGTLKKTDKVEKKQENKK--------KKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 166 Query: 96 TNTSTIKTNFENSFYND 46 TS T N F D Sbjct: 167 GITSKAMT-VVNMFMGD 182 >At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat family protein similar to TUPA (GI:11066216) [Emericella nidulans]; similar to damage-specific DNA binding protein 2, Homo sapiens ,PIR2:I38909; contains Pfam PF00400: WD domain, G-beta repeat (3 copies,1 weak)|19797453|gb|AU229277.1|AU229277 Length = 783 Score = 27.1 bits (57), Expect = 9.2 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Frame = +3 Query: 207 LHDFYGL-FQFVLRFVSSQAPCLPYTVVHFHFLSINGFF*TMLNVFLDSRRLNFLRYSLF 383 LHD +G F + F L +H H L+I G F + + LD R+ F Sbjct: 109 LHDSFGKNFWQDVFFQGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDKNRIVGFGEDCF 168 Query: 384 SCFGNL 401 SC L Sbjct: 169 SCMPKL 174 >At3g51070.1 68416.m05592 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase Length = 895 Score = 27.1 bits (57), Expect = 9.2 Identities = 16/67 (23%), Positives = 31/67 (46%) Frame = -3 Query: 300 GNENEQRYTASKEPGTIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 121 G +NE++ TAS+E G + EK+ K+ G Q ++ K ++ +++ Sbjct: 254 GQQNEEKTTASEENG------KGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQ 307 Query: 120 NESRHSD 100 E R + Sbjct: 308 QEERKDE 314 >At2g22795.1 68415.m02704 expressed protein Length = 734 Score = 27.1 bits (57), Expect = 9.2 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -3 Query: 246 TEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNF 67 TEE + RK G + N+KS SE+S EEK +D ESR T S ++ Sbjct: 204 TEESEVEERKENGGTEE----NEKSGSEESEVEEK-KDNGGTEESREKSGTEESEVEEKK 258 Query: 66 EN 61 +N Sbjct: 259 DN 260 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,997,749 Number of Sequences: 28952 Number of extensions: 234980 Number of successful extensions: 839 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 839 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1151426952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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