Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0778
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.9  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   1.9  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   4.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   5.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.5  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   10.0 
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   10.0 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   10.0 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 21  FFYDIRAICDHGSLARPN*FMIQRYLNINCIDKAISKLIFYKLLSSM*LKNDNYYYLFTN 200
           +FY+ +A+ D   +  P      R   +N    A    + Y+LLS   L++DNY+YLF +
Sbjct: 226 WFYENKALEDTPHVNGPT----YRRWKLNLPQMANLHRLGYQLLSD--LRDDNYFYLFND 279


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 125 NRLINTIYVQIPLNHKSIWSCQATMITDCSNII 27
           N L+ T++ Q PL + +IWS QA  I    NI+
Sbjct: 50  NSLLQTLF-QTPLPNANIWSNQAIRILMAFNIL 81


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 163 NLKMTITIIYLQILRHLGFHKNITTQSCIFSKKKDTKNQNTLNQC 297
           N+ +T  + Y+  + HLG     T  + +F++    +N NTL  C
Sbjct: 223 NILITSALPYVNNVPHLGNIVGSTLSADVFARYHRARNHNTLYIC 267


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 343 EIKRYCQHAKMPFVCDTGSMC 281
           ++  YC + K+P +  TGS C
Sbjct: 233 DLLSYCYNHKLPVIASTGSAC 253


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 162 TYWTKVCRKSALKSPYQYNLCSDTSES 82
           TY  K+C +  +  P + NLC +  ES
Sbjct: 163 TYDHKLCLRKTISEPVKCNLCYECIES 189


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 318 QKCLSYVTLVQCVLI 274
           QKC SY   + CVLI
Sbjct: 901 QKCFSYKNFISCVLI 915


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 321 MQKCLSYVTLVQCVLIFCIFFF 256
           + KCL+YV  V    IF IF F
Sbjct: 264 LSKCLNYVNTVIVYPIFVIFVF 285


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 383 YKYVTYNYVIIINNYSLIFSIERNVLVTW 469
           Y Y +  + I+I  Y   F+I+   + TW
Sbjct: 73  YDYESKRHRIVIRGYDKFFNIDEVPITTW 101


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 99  NINCIDKAISKLIFYKLLSSM*LKNDNYYYLFTNITASRVSQKYHNSKLH 248
           N N  +  + K  F KLL+S+  + D Y+ L      S +  +Y+   LH
Sbjct: 521 NKNSDNPRLEKFSFEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWLH 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,834
Number of Sequences: 5004
Number of extensions: 41853
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)