Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0778
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)                      29   2.6  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
          Length = 269

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 328 NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           N    Q+H Y +  L+ R  I H+Q   YN+  L
Sbjct: 87  NIAHIQKHKYNENSLQVRTNIAHIQYHKYNENSL 120



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 202 LRHLGFHK----NITTQSCIFSKKKDTKNQNTLNQCHIRKAFLHVGNTV*FQRHTYTDTF 369
           + H+ +HK    ++  ++ I   +    N+N+L    +R    H+      Q H Y +  
Sbjct: 179 IAHIQYHKYNENSLQVRTLIAHIQYHKYNENSLQ---VRTNIAHI------QYHKYNENS 229

Query: 370 LKQRLQIRHLQLRNYNKQLL 429
           L+ R  I H+Q   YN+  L
Sbjct: 230 LQVRTHIEHIQYHKYNENSL 249



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 328 NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           N    Q H Y +  L+ R  I H+Q   YN+  L
Sbjct: 11  NIAHIQYHKYNENSLQVRTHIEHIQYHQYNENSL 44



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 328 NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           N    Q H Y +  L+ R  I H+Q   YN+  L
Sbjct: 49  NIAHIQYHKYNENSLQVRTHIEHIQYHQYNENSL 82



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 343 QRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           Q H Y +  L+ R  I H+Q   YN+  L
Sbjct: 240 QYHKYNENSLQVRTHIEHIQYHKYNENSL 268


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 289  NQCHIRKAFLHVGNTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
            N   +R   +H+      Q H Y +  L+ R  I H+Q   YNK  L
Sbjct: 2287 NSLQVRTYIVHI------QYHKYNENSLQVRTNIVHIQYHQYNKNSL 2327



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 328  NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNK---QLLLNI 438
            N    Q H Y +  L+ R  I H+Q   YN+   Q+L NI
Sbjct: 2332 NIAHIQYHQYNENSLQVRTNIAHIQYHKYNENSLQVLTNI 2371



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 328  NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
            N V  Q H Y    L+ R  I H+Q   YN+  L
Sbjct: 2313 NIVHIQYHQYNKNSLQVRTNIAHIQYHQYNENSL 2346


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 328 NTV*FQRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           N    Q H Y +  L+ R  I H+Q   YN+  L
Sbjct: 45  NIAHIQYHKYNENSLQVRTHIEHIQYHKYNENSL 78



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 343 QRHTYTDTFLKQRLQIRHLQLRNYNKQLL 429
           Q H Y +  L+ R  I H+Q   YN+  L
Sbjct: 69  QYHKYNENSLQVRTHIEHIQYHKYNENSL 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,834
Number of Sequences: 59808
Number of extensions: 284863
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)