Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0778
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical pr...    32   0.24 
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    28   5.2  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    28   5.2  

>Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical
           protein C48G7.2 protein.
          Length = 474

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 171 NDNYYYLFTNITASRVSQKYHNSKLHFQ*KKRYKK 275
           N+NYY LF+ I +  VS+K  +  L+F+ +K YKK
Sbjct: 405 NENYYNLFSLIIS--VSRKKKSENLNFENRKNYKK 437


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 118 LSIQFMFRYL*IINQFGL 65
           LS+QF++RY  I +QFGL
Sbjct: 116 LSVQFVYRYCAIFHQFGL 133


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 309 LSYVTLVQCVLIFCIFFFTENAALSC 232
           L+Y+ L + V +FC   FT NA++ C
Sbjct: 295 LTYLNLAENVKLFCHSLFTINASIHC 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,728,403
Number of Sequences: 27780
Number of extensions: 233134
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)