Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0778
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 338 DFKDTLTPILF*NNDYKYVTYNYVI 412
           DFKD L P+ F    Y+  T NY++
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLM 178


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 338 DFKDTLTPILF*NNDYKYVTYNYVI 412
           DFKD L P+ F    Y+  T NY++
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLM 178


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 338 DFKDTLTPILF*NNDYKYVTYNYVI 412
           DFKD L P+ F    Y+  T NY++
Sbjct: 205 DFKDPLIPVHFALRIYRNGTVNYLM 229


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 338 DFKDTLTPILF*NNDYKYVTYNYVI 412
           DFKD L P+ F    Y+  T NY++
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLM 178


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 291 PVSHTKGIFACWQYRLISKTH 353
           P+  T+ IF+C  Y  ++K H
Sbjct: 60  PIFGTRWIFSCIGYYKLNKIH 80


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 177 NYYYLFTNITASR 215
           ++Y+L+TN+TA R
Sbjct: 460 SHYHLYTNLTALR 472


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 339 SNGIANMQKCLSYVTLVQCVLIFCIFF 259
           S G+ +    +SYV  +   L+ C  F
Sbjct: 288 STGVRSSLPRISYVKAIDIYLVMCFVF 314


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 NNDYKYVTYNYVIIINNYS 430
           +N+Y Y   NY    NNY+
Sbjct: 319 SNNYNYNNNNYKYNYNNYN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,669
Number of Sequences: 438
Number of extensions: 2926
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)