Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0778
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    27   6.4  
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    27   6.4  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    27   8.5  

>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 148 FCPVCNLKMTITIIYLQILRHLGFHKNITTQSCIFSKKKDTK 273
           FC +C L+   T+++    + LG  K+  T  CI    KDT+
Sbjct: 648 FCYICRLRCGQTLVF----KWLGRRKSFCTLRCIGKYVKDTR 685


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 86  NHKSIWSCQATMITDCSNIIKKKKKN-GP 3
           NH   W+CQA     C  ++KK  ++ GP
Sbjct: 651 NHLFCWACQAHFCYLCKKVVKKSAQHYGP 679


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/99 (24%), Positives = 46/99 (46%)
 Frame = +1

Query: 106 IVLIRRFQS*FSTNFCPVCNLKMTITIIYLQILRHLGFHKNITTQSCIFSKKKDTKNQNT 285
           ++LI    S FS +  P   ++ T++  +LQIL H     +  + S +    K+T +   
Sbjct: 38  LLLIYNSFSVFSLHLVPNQPIQSTLSPTHLQILHHQTSTSSSVSDSSLLLVVKET-SLGF 96

Query: 286 LNQCHIRKAFLHVGNTV*FQRHTYTDTFLKQRLQIRHLQ 402
           + + ++    +    T  F+R T     + QRLQ++  Q
Sbjct: 97  IQKQNVSSTRIE-KKTRRFKRSTELTPAITQRLQVKSRQ 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,133
Number of Sequences: 28952
Number of extensions: 189932
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)