Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0776
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 139 2e-34
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 3e-10
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 7e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 0.001
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.092
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 27 1.5
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 4.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.0
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 139 bits (337), Expect = 2e-34
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 290 PSIVHRKCF 264
P IV+RKCF
Sbjct: 367 PGIVYRKCF 375
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/35 (74%), Positives = 26/35 (74%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHE TYNSIMKCDVDIRKDL GTTMYP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -1
Query: 467 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 297
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 296 SGP---SIVHRKC 267
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL 511
GI + N I +CDVDIR L
Sbjct: 326 GIPQLFQNCISECDVDIRASL 346
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -1
Query: 467 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 288
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 287 SIVHRKCF 264
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = -1
Query: 470 PGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDE 297
PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 357 PGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDE 416
Query: 296 SG 291
G
Sbjct: 417 VG 418
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
G+HE Y SI+ CD ++R L GT++ P
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIP 357
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 7e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -1
Query: 413 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 291
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMY 472
G+ E +++I DVDIRK L G++MY
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMY 306
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PG+ R+++E+T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 290 PSIV 279
P +
Sbjct: 708 PEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G
Sbjct: 333 PGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHG 391
Query: 290 PSIVHRK 270
+I+ RK
Sbjct: 392 ANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 410 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 273
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.092
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYD 300
PG A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 543 PGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWK 602
Query: 299 ESGPSIVHRK 270
G ++ K
Sbjct: 603 MLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 371 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 270
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 337 VEREARIDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGVH 477
+ + R+DP + ++++F+ R SFCI S+ G+H
Sbjct: 104 INQNIRLDPKYSIPGVCAVTLIVIMFLAPVGRLFWSFCIVSSFAGLH 150
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 507 PTPYCPVGTTMYPWNRRPYAKGNHSSRPI 421
PTP PV T+ +P + RP N RP+
Sbjct: 330 PTPAPPVKTSPHPASYRPQPTRNVEVRPL 358
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 446 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 336
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = -3
Query: 495 CPVGTTMYPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTNVDL 316
CP + W + KG+ + +E + SSR + + W+D YL + +D+
Sbjct: 475 CPFADVLGRWYEPWFVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDM 531
Query: 315 ETRV 304
+ V
Sbjct: 532 VSAV 535
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 379 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 284
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 355 SSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTR 251
SSP PSN S+N + TS++ Y + S +R
Sbjct: 113 SSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSR 147
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 373 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 287
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 312 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 398
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 373 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 287
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,456
Number of Sequences: 5004
Number of extensions: 47271
Number of successful extensions: 149
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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