Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0776
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35
SB_56| Best HMM Match : Actin (HMM E-Value=0) 145 3e-35
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 3e-35
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 144 3e-35
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 3e-35
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 8e-35
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 127 6e-30
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 42 3e-04
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_54| Best HMM Match : Actin (HMM E-Value=0) 34 0.096
SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78) 31 0.90
SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49) 29 2.1
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 8.4
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 145 bits (351), Expect = 3e-35
Identities = 67/69 (97%), Positives = 68/69 (98%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 308 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 290 PSIVHRKCF 264
PSIVHRKCF
Sbjct: 368 PSIVHRKCF 376
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/35 (74%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL G+TMYP
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 308
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 145 bits (351), Expect = 3e-35
Identities = 67/69 (97%), Positives = 68/69 (98%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 290 PSIVHRKCF 264
PSIVHRKCF
Sbjct: 367 PSIVHRKCF 375
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/35 (74%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL G+TMYP
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 307
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 144 bits (350), Expect = 3e-35
Identities = 67/69 (97%), Positives = 68/69 (98%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 290 PSIVHRKCF 264
PSIVHRKCF
Sbjct: 367 PSIVHRKCF 375
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL G+TM+P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFP 307
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 144 bits (350), Expect = 3e-35
Identities = 67/69 (97%), Positives = 68/69 (98%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 308 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 290 PSIVHRKCF 264
PSIVHRKCF
Sbjct: 368 PSIVHRKCF 376
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/35 (74%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL G+TMYP
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 308
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 144 bits (350), Expect = 3e-35
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 281 PGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 340
Query: 290 PSIVHRKCF 264
P+IVHRKCF
Sbjct: 341 PAIVHRKCF 349
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL GTTMYP
Sbjct: 247 GIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYP 281
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 143 bits (347), Expect = 8e-35
Identities = 66/69 (95%), Positives = 68/69 (98%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 270 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 329
Query: 290 PSIVHRKCF 264
P+IVHRKCF
Sbjct: 330 PAIVHRKCF 338
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHETTYNSIMKCDVDIRKDL GTTMYP
Sbjct: 236 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 270
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 127 bits (307), Expect = 6e-30
Identities = 57/69 (82%), Positives = 63/69 (91%)
Frame = -1
Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291
PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E G
Sbjct: 81 PGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYG 140
Query: 290 PSIVHRKCF 264
P IVHRKCF
Sbjct: 141 PPIVHRKCF 149
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
GIHE YN IMKCDVDIRKDL G+TM+P
Sbjct: 47 GIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFP 81
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = -1
Query: 431 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 264
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = -1
Query: 467 GIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASL 342
G +R+ +E+ + P +M++K+I+ E++++ WIGGSILASL
Sbjct: 186 GFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -1
Query: 413 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 291
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 33.9 bits (74), Expect = 0.096
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKDL 511
GIHE+ + SI KCD+D+R +L
Sbjct: 2318 GIHESIFKSIKKCDIDLRAEL 2338
>SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78)
Length = 140
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 366 RWIDPR-LPLYLPTNVDLETRVRRVWPLHCTQEVLLNARASLPPAARG 226
RWIDPR + P NVD R +H + LL + S+P +RG
Sbjct: 29 RWIDPRGNQIPAPPNVDSSGRSLSADGIHKSDLRLLGSSLSIPSTSRG 76
>SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)
Length = 750
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Frame = -1
Query: 551 TPS*SATWTSV----RTCSQHRIVRWVPPCTP-----GIADRMQKEITALAPSTMKIKII 399
+P ATWT+V R CS H + ++ G+AD K + K++
Sbjct: 41 SPDGGATWTTVTFSSRMCSYHDLNGFLHQDMKSNGHVGVADGKDKLYIDIVFVLTTYKVV 100
Query: 398 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 276
Y + I G+ L F ISK EY P+I++
Sbjct: 101 VIVGDNYELDIRGTKFGELIGFDPKVISKTEYGSKLPNIMN 141
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 382 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 263
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Frame = -1
Query: 473 TPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASLSTFQQMW 321
TPG R+ +EI L S +K+ PP + W+GG+I SL
Sbjct: 90 TPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRS 149
Query: 320 ISKQEYDE 297
+++ Y +
Sbjct: 150 TTRERYQQ 157
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 364 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTRV 248
VD+S P SLP+ K G + S P GS+ SK T V
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTAV 1978
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,385
Number of Sequences: 59808
Number of extensions: 413813
Number of successful extensions: 1230
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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