BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0776 (578 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35 SB_56| Best HMM Match : Actin (HMM E-Value=0) 145 3e-35 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 3e-35 SB_56628| Best HMM Match : Actin (HMM E-Value=0) 144 3e-35 SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 3e-35 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 8e-35 SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 127 6e-30 SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06 SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 42 3e-04 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04 SB_54| Best HMM Match : Actin (HMM E-Value=0) 34 0.096 SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78) 31 0.90 SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49) 29 2.1 SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 8.4 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 145 bits (351), Expect = 3e-35 Identities = 67/69 (97%), Positives = 68/69 (98%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 308 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367 Query: 290 PSIVHRKCF 264 PSIVHRKCF Sbjct: 368 PSIVHRKCF 376 Score = 57.2 bits (132), Expect = 9e-09 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL G+TMYP Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 308 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 145 bits (351), Expect = 3e-35 Identities = 67/69 (97%), Positives = 68/69 (98%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 307 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366 Query: 290 PSIVHRKCF 264 PSIVHRKCF Sbjct: 367 PSIVHRKCF 375 Score = 57.2 bits (132), Expect = 9e-09 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL G+TMYP Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 307 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 144 bits (350), Expect = 3e-35 Identities = 67/69 (97%), Positives = 68/69 (98%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 307 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366 Query: 290 PSIVHRKCF 264 PSIVHRKCF Sbjct: 367 PSIVHRKCF 375 Score = 55.6 bits (128), Expect = 3e-08 Identities = 25/35 (71%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL G+TM+P Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFP 307 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 144 bits (350), Expect = 3e-35 Identities = 67/69 (97%), Positives = 68/69 (98%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 308 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367 Query: 290 PSIVHRKCF 264 PSIVHRKCF Sbjct: 368 PSIVHRKCF 376 Score = 57.2 bits (132), Expect = 9e-09 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL G+TMYP Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYP 308 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 144 bits (350), Expect = 3e-35 Identities = 66/69 (95%), Positives = 69/69 (100%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 281 PGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 340 Query: 290 PSIVHRKCF 264 P+IVHRKCF Sbjct: 341 PAIVHRKCF 349 Score = 58.8 bits (136), Expect = 3e-09 Identities = 27/35 (77%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL GTTMYP Sbjct: 247 GIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYP 281 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 143 bits (347), Expect = 8e-35 Identities = 66/69 (95%), Positives = 68/69 (98%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG Sbjct: 270 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 329 Query: 290 PSIVHRKCF 264 P+IVHRKCF Sbjct: 330 PAIVHRKCF 338 Score = 58.8 bits (136), Expect = 3e-09 Identities = 27/35 (77%), Positives = 27/35 (77%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHETTYNSIMKCDVDIRKDL GTTMYP Sbjct: 236 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 270 >SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) Length = 149 Score = 127 bits (307), Expect = 6e-30 Identities = 57/69 (82%), Positives = 63/69 (91%) Frame = -1 Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 291 PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E G Sbjct: 81 PGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYG 140 Query: 290 PSIVHRKCF 264 P IVHRKCF Sbjct: 141 PPIVHRKCF 149 Score = 48.4 bits (110), Expect = 4e-06 Identities = 22/35 (62%), Positives = 24/35 (68%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469 GIHE YN IMKCDVDIRKDL G+TM+P Sbjct: 47 GIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFP 81 >SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) Length = 543 Score = 48.8 bits (111), Expect = 3e-06 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = -1 Query: 431 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 264 + P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340 >SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) Length = 240 Score = 42.3 bits (95), Expect = 3e-04 Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 3/45 (6%) Frame = -1 Query: 467 GIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASL 342 G +R+ +E+ + P +M++K+I+ E++++ WIGGSILASL Sbjct: 186 GFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 41.5 bits (93), Expect = 5e-04 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -1 Query: 413 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 291 KI+I PP RK+ V++GG++LA + W++++EY+E G Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 33.9 bits (74), Expect = 0.096 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = -3 Query: 573 GIHETTYNSIMKCDVDIRKDL 511 GIHE+ + SI KCD+D+R +L Sbjct: 2318 GIHESIFKSIKKCDIDLRAEL 2338 >SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78) Length = 140 Score = 30.7 bits (66), Expect = 0.90 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -3 Query: 366 RWIDPR-LPLYLPTNVDLETRVRRVWPLHCTQEVLLNARASLPPAARG 226 RWIDPR + P NVD R +H + LL + S+P +RG Sbjct: 29 RWIDPRGNQIPAPPNVDSSGRSLSADGIHKSDLRLLGSSLSIPSTSRG 76 >SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49) Length = 750 Score = 29.5 bits (63), Expect = 2.1 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 9/101 (8%) Frame = -1 Query: 551 TPS*SATWTSV----RTCSQHRIVRWVPPCTP-----GIADRMQKEITALAPSTMKIKII 399 +P ATWT+V R CS H + ++ G+AD K + K++ Sbjct: 41 SPDGGATWTTVTFSSRMCSYHDLNGFLHQDMKSNGHVGVADGKDKLYIDIVFVLTTYKVV 100 Query: 398 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 276 Y + I G+ L F ISK EY P+I++ Sbjct: 101 VIVGDNYELDIRGTKFGELIGFDPKVISKTEYGSKLPNIMN 141 >SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 382 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 263 STP +V PP PSN+ + +K S +P T S S Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256 >SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 245 Score = 28.7 bits (61), Expect = 3.6 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Frame = -1 Query: 473 TPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASLSTFQQMW 321 TPG R+ +EI L S +K+ PP + W+GG+I SL Sbjct: 90 TPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRS 149 Query: 320 ISKQEYDE 297 +++ Y + Sbjct: 150 TTRERYQQ 157 >SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) Length = 2442 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -2 Query: 364 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTRV 248 VD+S P SLP+ K G + S P GS+ SK T V Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTAV 1978 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,852,385 Number of Sequences: 59808 Number of extensions: 413813 Number of successful extensions: 1230 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1224 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1385833362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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