Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0776
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             109   3e-26
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  109 bits (261), Expect = 3e-26
 Identities = 51/52 (98%), Positives = 52/52 (100%)
 Frame = -1

Query: 470 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 315
           PGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 82  PGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 62.5 bits (145), Expect = 3e-12
 Identities = 28/36 (77%), Positives = 28/36 (77%)
 Frame = -3

Query: 576 CGIHETTYNSIMKCDVDIRKDL*PTPYCPVGTTMYP 469
           CGIHETTYNSIMKCDVDIRKDL        GTTMYP
Sbjct: 47  CGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 82


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 492 PVGTTMYPWNRRPYAKGNHSSRPIDNE 412
           PV   ++ W R  Y + NH S  +D E
Sbjct: 53  PVCNGLWRWIRLTYGQTNHISLTLDLE 79


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 492 PVGTTMYPWNRRPYAKGNHSSRPIDNE 412
           PV   ++ W R  Y + NH S  +D E
Sbjct: 91  PVCNGLWRWIRLTYGQTNHISLTLDLE 117


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 502 CWLQVLTDVHVALHDGVI 555
           C  Q+L  VH   H+GV+
Sbjct: 14  CIQQILESVHHCHHNGVV 31


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 335 FQQMWISKQEYDESGPSIVHRK 270
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,188
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)