Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0775
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    24   5.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   6.6  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    24   6.6  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    23   8.7  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -1

Query: 309 YLKSGWRIYVV--VCLMGSSTI*HQVG--CELVHPFKQ-*EFFIFTSSSGHSIKQSRFLG 145
           ++K+GW    +  VC   +  +  ++   CE+V PF +  EF+ F          S+ +G
Sbjct: 265 WVKNGWEYVEILDVCTFWNFLMDSKLKHLCEMVEPFDEWEEFYFFLQHYSIQHASSKLVG 324

Query: 144 PY 139
            Y
Sbjct: 325 KY 326


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 161 KVAFSDPIYA*IFKSYAPDFDAVFFNR 81
           ++A  D +   +   Y PDFD++F  R
Sbjct: 593 RLALIDLVSQYVILFYEPDFDSIFLRR 619


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 155 RLCFILCPDDEVNIKNSYCLNG 220
           RL  ++C +D + +   YC NG
Sbjct: 87  RLYEVVCTEDRIYLAMEYCPNG 108


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 242 RWAVSLSTHLSNKNFL 195
           RW  +L+TH++N N++
Sbjct: 395 RWWEALNTHIANVNYI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,719
Number of Sequences: 5004
Number of extensions: 22596
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)