Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0775
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8)             28   1.9  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.4  
SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)                       26   5.9  
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)                   26   5.9  

>SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8)
          Length = 397

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 146 PRKRLCFILCPDDEVNIKNSYCLNGWTSSQP 238
           P +R+ F   P D + + +S+CL GW SS+P
Sbjct: 297 PHRRVSFD--PTDTIGL-SSHCLAGWESSKP 324


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 278  WYVLWAPVPFDTRWAVSLSTHLSNKNFLYLLHHQDI 171
            WY L    P DT W  SL+T L +   L L + + I
Sbjct: 1407 WYWLVMDGPVDTLWVESLNTVLDDSKLLCLSNGERI 1442


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -2

Query: 320  LRNYISRVGGAFTLWYVLWAPVPFDTRWAVSLSTHLSNKNFLYLLHHQD 174
            +RN   R G  F L        P D RW ++ +    N  F  +  HQ+
Sbjct: 1199 VRNLTIREGENFNLGCSAHGSEPLDIRWLIAGANSTGNLTFTPIKQHQN 1247


>SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)
          Length = 370

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 293 GAFTLWYVLWAPVPFDTRWAVSLSTHLSNKNFLYLL 186
           G F    V W  VP DT    SL   LS  N L  L
Sbjct: 303 GDFATRAVTWGVVPLDTSRRCSLRERLSEHNALMCL 338


>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
          Length = 525

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 161 CFILCPDDEVNIKNSYCLNGWTSSQPTW 244
           C + CP      KN    N WT S  TW
Sbjct: 184 CQVTCPSGAQIYKNPSQYNYWTCSTGTW 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,581
Number of Sequences: 59808
Number of extensions: 165514
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)