Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0775
         (321 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011875-1|AAH11875.1|  234|Homo sapiens ELAVL3 protein protein.       31   0.58 
AL512714-1|CAC21655.1|  234|Homo sapiens hypothetical protein pr...    31   0.58 
AB065855-1|BAC06073.1|  324|Homo sapiens seven transmembrane hel...    29   3.1  
AK125769-1|BAC86281.1|  125|Homo sapiens protein ( Homo sapiens ...    28   7.2  

>BC011875-1|AAH11875.1|  234|Homo sapiens ELAVL3 protein protein.
          Length = 234

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 234 CELVHPFKQ*EFFIFTSSSGHSIKQSRFLGPYICLNL 124
           C L  PF+   FF+F   SGHS  +SR   P  CL++
Sbjct: 196 CHLPIPFRFVGFFVFPDCSGHS-PRSRAPAPGFCLDI 231


>AL512714-1|CAC21655.1|  234|Homo sapiens hypothetical protein
           protein.
          Length = 234

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 234 CELVHPFKQ*EFFIFTSSSGHSIKQSRFLGPYICLNL 124
           C L  PF+   FF+F   SGHS  +SR   P  CL++
Sbjct: 196 CHLPIPFRFVGFFVFPDCSGHS-PRSRAPAPGFCLDI 231


>AB065855-1|BAC06073.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 308 ISRVG-GAFTLWYVLWAPVPFDTRWAVSLSTHLSNKNFLYLLHHQDIV 168
           ++++G  A T  +V + P+PF  +W     TH    +F     HQDI+
Sbjct: 154 VAKIGLSALTRGFVFFFPLPFILKWLSYCQTHTVTHSFCL---HQDIM 198


>AK125769-1|BAC86281.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43781 fis, clone TESTI2051767. ).
          Length = 125

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 294 WRIYVVVCLMGSSTI*HQVGCELVHPFKQ*EFFIFTSSSGHSIKQSRFLGPYI 136
           W ++++V + G       + C  +HP     +F  T  SG S   S +L P+I
Sbjct: 52  WTVWLIVVVQGQVMCHPSLKC--LHPVNCLAYFPLTPGSGPSSLLSPYLSPHI 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,641,141
Number of Sequences: 237096
Number of extensions: 803866
Number of successful extensions: 4853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4853
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)