Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0775
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   0.91 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   6.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 279 VVCLMGSSTI*HQVGCELVHPFKQ*EFFIFTSSSGHSI 166
           ++C+   ST       E+  PFK+ E F  T+++ HSI
Sbjct: 75  LMCVEKVSTTIVPTTQEINKPFKRLELFNITTTTIHSI 112


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 253 GTGAHKTYHNVNAPP 297
           GT +H T   VN PP
Sbjct: 665 GTASHSTTLTVNVPP 679


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 245 CQMVLEPIRHTT 280
           C M++E + HTT
Sbjct: 146 CSMMIESLSHTT 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,662
Number of Sequences: 438
Number of extensions: 1692
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)