Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.066
UniRef50_UPI00015C6729 Cluster: NADH dehydrogenase subunit 4; n=...    35   1.4  
UniRef50_P29465 Cluster: Chitin synthase 3; n=23; Fungi|Rep: Chi...    34   2.5  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   3.3  
UniRef50_Q5CQZ9 Cluster: FRP1 like protein involved in DNA repai...    34   3.3  
UniRef50_UPI00006CAA53 Cluster: Protein kinase domain containing...    33   5.7  
UniRef50_Q54SV4 Cluster: Putative uncharacterized protein; n=1; ...    32   10.0 

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.5 bits (88), Expect = 0.066
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = -2

Query: 357 MGDGNHSPSGGPYDRLPTR 301
           MGDGNHSPSG PY  LPTR
Sbjct: 1   MGDGNHSPSGRPYASLPTR 19


>UniRef50_UPI00015C6729 Cluster: NADH dehydrogenase subunit 4; n=1;
           Pocillopora eydouxi|Rep: NADH dehydrogenase subunit 4 -
           Pocillopora eydouxi
          Length = 496

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +2

Query: 80  KYKLCLFSISNNIVNYFLLFDCFFVYLQIKNGTILCTGFFVATLWFASSTRSLCLVRVLT 259
           ++ LCLF +   ++  F++FD    YL  +   IL   FF+  +W +   +         
Sbjct: 124 EFLLCLFFLEFLLIGVFIVFDLLLFYLFFEG--ILIPMFFLIGIWGSREEKVRASFYFFF 181

Query: 260 FSIA*KLTFFIIITLVGRR 316
           F+    L FF II  + +R
Sbjct: 182 FTFIGSLFFFFIILFLYQR 200


>UniRef50_P29465 Cluster: Chitin synthase 3; n=23; Fungi|Rep: Chitin
           synthase 3 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1165

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -2

Query: 303 RVIIIKKVNFYAIENVKTRTKHSDLVEDANHNVATKKPVHRIVP 172
           R  + +K   Y ++N KT  KH++ +ED ++N+ TK P+  + P
Sbjct: 477 RWTVARKQGAYIVDN-KTMDKHTNDIEDWSNNIQTKAPLKEVDP 519


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 397  RQRPGSDPGIAEVHGRR 347
            RQR GS PGIAEVHGRR
Sbjct: 970  RQRLGSAPGIAEVHGRR 986


>UniRef50_Q5CQZ9 Cluster: FRP1 like protein involved in DNA repair
           with a FAT domain and a phosphatidylinositol kinase
           domain at the C-terminus; n=4; Cryptosporidium|Rep: FRP1
           like protein involved in DNA repair with a FAT domain
           and a phosphatidylinositol kinase domain at the
           C-terminus - Cryptosporidium parvum Iowa II
          Length = 3461

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +2

Query: 11  INLIFRKKKNYN*FLHLKYMKHNKYKLCLFSISNNIVNYFL-LFDCFFVYLQIKNGTILC 187
           I   F+K+ +Y    +L  +K+N  +   F  + ++VN F  +  C+  +      TI+ 
Sbjct: 276 ITFDFKKEISYPNIFYL--IKNNTVE---FLYNEDVVNQFTNILPCYIAHCVHNTSTIVL 330

Query: 188 TGFFVATLWFASSTRSLCLVRVLTFSIA*KLTFFIIITLV 307
            G F  T+W+ +     CL R L ++I    T+   I L+
Sbjct: 331 FGEF--TIWYLNGFLRACLFRKLNYNIQNSNTYISQIELI 368


>UniRef50_UPI00006CAA53 Cluster: Protein kinase domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: Protein
           kinase domain containing protein - Tetrahymena
           thermophila SB210
          Length = 840

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 53  LHLKYMKHNKYKLCLFSISNNIVNYFLLFDCFFVYLQ 163
           +H K M  NKYKL +F I   ++   L+ DC ++YL+
Sbjct: 213 IHQKNM--NKYKLSVFQIGMTLLESALIQDCSYIYLE 247


>UniRef50_Q54SV4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 950

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = -3

Query: 206 SRQRNLYIESCRFLFVNRQKNNRREESNLQYYSI*RRDRVYICYVSCILNVKISCNFFFF 27
           + + NL +E+ RFL + +Q N + EESN     + +++ +Y    + ++NV   C+F  F
Sbjct: 655 TNESNLEMEN-RFLEIQKQYNKQIEESNSLSDLLTQQNNLYKTIQNQLINVASQCDFITF 713


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,000,610
Number of Sequences: 1657284
Number of extensions: 10078107
Number of successful extensions: 26505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26500
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)