Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   3.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   5.2  

>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 IVNYFLLFDCFFVYLQIKNGT 178
           ++++FLL  C F Y  I NG+
Sbjct: 94  VISFFLLIGCLFAYWFINNGS 114


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 196 LCRDIVVRVFHEVTVLSASFNVFDSV 273
           +C  +V ++FH   VL  SFN  D V
Sbjct: 626 ICMAMVDQLFHSKVVLDPSFNSIDEV 651


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345 YR-RPWTSAMPGSEPGRCLKNCLITQNCLK 431
           YR +PW ++ P  E   C KN  I ++CLK
Sbjct: 111 YRIKPWYTS-PYPEEYSCAKNLYICESCLK 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,588
Number of Sequences: 5004
Number of extensions: 44175
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)