Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0054 - 15456668-15459691                                         29   3.1  
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867...    29   4.1  
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    28   5.4  

>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 563 YTVKHNMKSPYDFYSNILNNKL 498
           +T+  N K+ Y +YSN+LN+KL
Sbjct: 228 WTMCVNCKTKYQYYSNVLNHKL 249


>05_05_0210 -
           23285241-23285338,23286297-23286447,23286660-23286748,
           23287108-23288394,23288460-23288516,23289446-23289644,
           23290240-23290342,23291048-23291229,23291850-23291899,
           23292192-23292360
          Length = 794

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 342 GYRRPWTSAMPGSEPGRCLKNCLITQNCLKKL*RNITYPPSVLCLFMLYP 491
           G  R   S  PGS P RC   C     C      +++ PP VL     YP
Sbjct: 82  GLGRRLLSGGPGSHPPRCTSKCGSCSPCSPV---HVSVPPGVLVTTEYYP 128


>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 119 VNYFLLFDCFFVYLQIKNGTILCTGFFVATLWFASSTRSLCLVRVL 256
           +NYFL+  C  + +  K G  +   F VA ++    T +L  V +L
Sbjct: 443 INYFLMVACILITVGFKGGPEIGQAFGVAVIFVMLFTTNLMTVVML 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,728
Number of Sequences: 37544
Number of extensions: 257771
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)