Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             30   1.4  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      29   2.4  
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)                    29   4.1  
SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 634  QQVCCSALLPTHY*KNTYGPIIRYIPLNTI*NHH 533
            +Q  C    P  Y  +TYGP++ Y P   I  H+
Sbjct: 2249 RQWTCKKCPPGFYCNDTYGPVVDYAPFECIEGHY 2282


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 312 DDHTARLMVSGYRRPWTSAMPGSEPGRCLK 401
           +++T   + +GY   ++S  PG EPG+CLK
Sbjct: 13  NNNTEYRLQAGYGLRFSSKRPGYEPGQCLK 42


>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 351 DGNHSPSGGPYDRLPTRVIIIKKVNFYAIENVKTRT 244
           DG H    GP+   P+  ++    N Y++E VK  T
Sbjct: 449 DGEHELVNGPFVASPSGHLVTSAHNSYSLEEVKVET 484


>SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 378 SEPGRCLKNCLITQNC 425
           ++P  C KNC +T NC
Sbjct: 17  TDPSECKKNCFLTDNC 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,143,309
Number of Sequences: 59808
Number of extensions: 316414
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)