Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    24   1.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +2

Query: 50  FLHLKYMKHNKYKLCLFSISNNIVNYFLLFDCFFVYLQIKNGTILCTGFFVATLWFASST 229
           +++   +    Y L L S +NNI     LFD       I N T L     +  L+  +ST
Sbjct: 79  YIYHTLVAEQSYGLTLPSWTNNIFPKGELFDATVFTYNITNSTPL-----LKKLYGGNST 133

Query: 230 RSLCLVRVLTFSI 268
               L+R  +FS+
Sbjct: 134 IIFLLIRFKSFSL 146


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 551 HNMKSPYDFYSNILNNKLTVRIKHKQAKNTRRIG 450
           H MK+  D+Y  + N   T ++ H      ++IG
Sbjct: 282 HKMKNIIDYYLVLENTDHTKQLSHDVLLRAKQIG 315


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 65  ILNVKISCNFFFFGRLN*LH 6
           I++VKI  N  + GR+N +H
Sbjct: 355 IISVKIIQNLAYSGRMNRIH 374


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 326 PPDGEWLPSPMDFSNA 373
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 302 LVGRRSYGPPDGEWLP 349
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 140 DCFFVYLQIKNGTILCTGFFVATLWFASSTRSLCLVRVLTFSI 268
           DC  +    K     C   +V      ++T+ +C  ++LTF +
Sbjct: 117 DCSGIVSASKLAIDKCDRLWVLDSGLVNNTQPMCSPKLLTFDL 159


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 140 DCFFVYLQIKNGTILCTGFFVATLWFASSTRSLCLVRVLTFSI 268
           DC  +    K     C   +V      ++T+ +C  ++LTF +
Sbjct: 117 DCSGIVSASKLAIDKCDRLWVLDSGLVNNTQPMCSPKLLTFDL 159


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 140 DCFFVYLQIKNGTILCTGFFVATLWFASSTRSLCLVRVLTFSI 268
           DC  +    K     C   +V      ++T+ +C  ++LTF +
Sbjct: 117 DCSGIVSASKLAIDKCDRLWVLDSGLVNNTQPMCSPKLLTFDL 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,241
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)