Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0774
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12100.1 68416.m01506 cation efflux family protein / metal to...    29   1.9  
At2g37110.1 68415.m04553 expressed protein contains Pfam profile...    29   2.6  

>At3g12100.1 68416.m01506 cation efflux family protein / metal
           tolerance protein, putative member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 393

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 77  NKYKLCLFSISNNIVNYFLLFDCFFVYLQIKNGTILCTGFFVATLW 214
           N + +CL  IS++I +  L+   + + L ++N  +LC G    T++
Sbjct: 252 NYHSVCLHVISDSIRSAGLILASWLLSLGVENAEVLCLGLVSVTVF 297


>At2g37110.1 68415.m04553 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 242

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 467 NTRRIGNVPSQFF*TILSY*AIFKAAAWL*PWHC*SPW 354
           N  R+G+ P  F    L+Y  ++     L  W+C +PW
Sbjct: 111 NAERLGSAPGTFSNHCLTYLGLYFVGNSLFGWNCLAPW 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,848,790
Number of Sequences: 28952
Number of extensions: 218666
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)