Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0773
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   1.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   1.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   1.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   3.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   3.0  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   3.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   4.0  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   4.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   4.0  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   5.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    24   9.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.3  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    24   9.3  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   9.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   9.3  

>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 349 NYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSAYFLRSYN 227
           N S      S+P    ST S  +PAPL    T+   LR+Y+
Sbjct: 157 NLSPYRSPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRTYH 197


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 206 NPSNFEPIRRAPNYPKDLRYLTDFKVPIKTFTVKP 102
           N ++FE    +PN+P   ++L+D +  I T    P
Sbjct: 131 NSNSFEGTGSSPNFPPQNQFLSDSRSSIATLNAIP 165


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 42  RLSTPVLRPFSH-RILVVEFVRFHGKSFYWN 131
           RLST  +R   +  +L++EF+  +GK FY++
Sbjct: 423 RLSTGSMREEDNFGVLLLEFLELYGKQFYYD 453


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 328 SGSFPDRPVSTMSSSTPAPLVPFT 257
           S  FPDRPVS   SST    V  T
Sbjct: 569 SFDFPDRPVSRRPSSTSRSSVKIT 592


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/64 (21%), Positives = 25/64 (39%)
 Frame = +3

Query: 18  INRASIDIRLSTPVLRPFSHRILVVEFVRFHGKSFYWNLEVSQVPEILGIIRGSSDRFKI 197
           +N  S+D  L+ P +         VE  +  GKSF++ +  S +     +    +   K 
Sbjct: 807 VNMRSLDTLLACPKIDEALFNSTSVELTKHMGKSFFYKILRSSLASFAQVFIDITHNSKF 866

Query: 198 TGIC 209
              C
Sbjct: 867 NSCC 870


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 138 LQGSNKNFYRETSQIQRLGFYGKTDATPVST 46
           +Q S++N YRE  +  RL   G   +TP +T
Sbjct: 739 VQLSHQNNYREPIRATRLALAGALPSTPTAT 769


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 203 PSNFEPIRRAPNYPKDLRYLTDFKVPIKTFTVKPHKFND 87
           PS  +   ++ NYP  L+ L D K  + TF++  +   D
Sbjct: 238 PSALQSQLQSFNYPPSLKKLNDAKAHVFTFSMNYYMTRD 276


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 15  EINRASIDIRLSTPVLRPFSHRILVVEFVRFHGKS 119
           E+ +    +R   P+    S+R+L+ E+V  HG S
Sbjct: 655 EVKKIEASLRKRLPIGFQASYRMLIREYVNGHGYS 689


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +2

Query: 197 YW-DLRIVVSLIVRAKE 244
           YW DL I+VSL+ RAKE
Sbjct: 621 YWLDLNILVSLLNRAKE 637


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 373 TPANSCSANYSILLDSGSFPDRPVSTMSSSTPAP 272
           TPAN+ SAN+S L+   +    P S  +S+   P
Sbjct: 424 TPANNSSANHSPLMAPNASTLNPSSLGASNLSQP 457


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 376  STPANSCSANYSILLDSGSFPDRPVSTMSSS 284
            S+  +S S N S+L  SG F     ST SSS
Sbjct: 3502 SSIVSSVSLNSSLLSSSGGFSSSAFSTGSSS 3532


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 240 RKYAEVVNGTNGAGVDDDIVLTGLSGKLPESN 335
           R+    +NG  G G+ D +  +G S  LP  N
Sbjct: 413 RRQHRFINGEKGVGIQDILRKSGCSVILPPIN 444


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 63  RPFSHRILVVEFVRF 107
           RPF++R+L+  F++F
Sbjct: 257 RPFTYRVLIESFMKF 271


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 158 DLRYLTDFKVPIKTFTVKPH 99
           D+RY  DF+   K+FT K H
Sbjct: 14  DIRYKCDFQGCTKSFTRKEH 33


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 186 DPTSPELSQGSPVLD*LQGSNKNFY 112
           D  SP + +G+P +D L+GS +  +
Sbjct: 397 DHPSPGVGRGAPEIDILEGSTEKLH 421


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 263 VHHLGIFPSLLQLMRQRCA 207
           VHHL I    + LMR+R A
Sbjct: 820 VHHLQIHDKFVSLMRERVA 838


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 367 ANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSAYFLR 236
           +++C A+   L+ S  FP+  +  +  S PAP  P     Y+ R
Sbjct: 27  SSACRASEDHLVSS--FPNDSIIDLQPSRPAPEPPKKKFGYYAR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,561
Number of Sequences: 5004
Number of extensions: 32450
Number of successful extensions: 102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)