Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0773
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0679 - 26227654-26227770,26234067-26236217 33 0.076
06_03_1181 - 28227746-28229115,28229130-28229307 33 0.076
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 30 0.71
01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209 30 0.71
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 29 1.6
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 28 2.2
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 28 2.9
02_05_0223 - 26943210-26944623,26944741-26945666 27 3.8
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 27 5.0
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 27 6.6
04_04_0663 + 27058470-27059033,27059355-27059972 26 8.7
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 26 8.7
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 33.1 bits (72), Expect = 0.076
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -2
Query: 350 ELFDIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAP 171
E D+ ++QLPG+T + +++ +R + H+ + R P F+ R P
Sbjct: 417 EADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDDEMLIAAAKRALLPGPLRFDLARNRP 476
Query: 170 NYPKDL 153
KDL
Sbjct: 477 KTAKDL 482
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 33.1 bits (72), Expect = 0.076
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -2
Query: 350 ELFDIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAP 171
E D+ ++QLPG+T + +++ +R + H+ + R P F+ R P
Sbjct: 392 EADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDDEMLIAAAKRALLPGPLRFDLARNRP 451
Query: 170 NYPKDL 153
KDL
Sbjct: 452 KTAKDL 457
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 29.9 bits (64), Expect = 0.71
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -2
Query: 344 FDIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAPNY 165
F I R LP +Y+++ + HL + + ++P+ EP++ P++
Sbjct: 174 FLICYFRHLPVSEALHYLLLTKADLLAAVHLIEYTRGIGGRLFPISSPTTEEPLKEPPDF 233
Query: 164 PKDLRY----LTDFKVPIKTFTVKPHKFND 87
PK +R L + I + PH+F D
Sbjct: 234 PKPVRQAALRLNHYIKGISSLNKFPHEFTD 263
>01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209
Length = 321
Score = 29.9 bits (64), Expect = 0.71
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -2
Query: 350 ELFDIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAP 171
E D+ ++QLPG+T + +++ +R + + + R P F+ R P
Sbjct: 90 ETDDLYAMKQLPGETLRSFIVKFSRVRCQIRQVDDEMLIAAAKRALLPGPLRFDLARNIP 149
Query: 170 NYPKDL 153
KDL
Sbjct: 150 KTAKDL 155
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -2
Query: 341 DIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAPNYP 162
D+ L+Q+PG+T + +++ +R + + + R P F+ R P
Sbjct: 503 DLYALKQMPGETLRSFMVKFSRIRCQIRQVDDEMLIASAKRALLPGPLRFDLARNRPKTA 562
Query: 161 KDL 153
KDL
Sbjct: 563 KDL 565
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -2
Query: 329 LRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAPNY 165
+RQ+ + V +DA + +G FP LL+L + + N P+ A +
Sbjct: 14 IRQIGDEIADALVYLDAGTLEAFQFIGAFPLLLELGARAICSLENASPLDAAAEW 68
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 328 SGSFPDRPVSTMSSSTPAPLVPFTTS 251
S S P RP S+ SSS+P P FTTS
Sbjct: 66 SPSLPQRPRSSYSSSSPCPHA-FTTS 90
>02_05_0223 - 26943210-26944623,26944741-26945666
Length = 779
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 343 SILLDSGSFPDRPVSTMSSSTPAP 272
S LD G PD P S S+PAP
Sbjct: 124 STRLDLGILPDAPASVQPDSSPAP 147
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 189 TDPTSPELSQGSPVLD*LQGSNKNFYRETSQIQ 91
TD S +++ G+PV D L GSN+ + +S ++
Sbjct: 520 TDLDSQQITCGTPVNDPLAGSNQKLHLASSDLE 552
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -2
Query: 305 GQYYVIVDARAISPVHHLGIFPSLLQLM-RQRCAN--PSNFEPIRRAPNYP 162
G Y+++ A HH + + M R + PS ++P + AP YP
Sbjct: 357 GPNYLLLPPNAPKCAHHNNHYDGFMNFMHRDEEVDYFPSRYDPAKHAPRYP 407
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = -2
Query: 350 ELFDIVGLRQLPGQTGQYYVIVDARAISPVHHLGIFPSLLQLMRQRCANPSNFEPIRRAP 171
E ++ ++Q+PG+T + +++ +R + + + R P F+ R P
Sbjct: 263 EADNLYAMKQMPGETLRSFMVKFSRIRCQIRQVDEEMLIASAKRALLPGPLRFDLARNRP 322
Query: 170 NYPKDL 153
KDL
Sbjct: 323 KTAKDL 328
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 248 IFPSLLQLMRQRCANPSNFEPIRRAPNYPKDL 153
++PS+ +++R C NPS + + + KDL
Sbjct: 533 VYPSVCKMIRTYCMNPSGWTRVIVEKPFGKDL 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,711
Number of Sequences: 37544
Number of extensions: 199970
Number of successful extensions: 618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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