Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0773
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             28   2.2  
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      27   3.9  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   27   5.2  
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   6.8  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   27   6.8  
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)                    26   9.0  

>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 376 STPANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVP 263
           ST A  C+++ S+ L   + P  PV+T ++  P P  P
Sbjct: 244 STDALQCASSSSLSLTPPASPSDPVTTDATKAPVPSKP 281


>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 364 NSCSANYSILLDSGSFPDRPVSTMSS 287
           N C A YS +  SGS  D P+S+++S
Sbjct: 252 NKCEARYSDISPSGSDSDVPLSSVAS 277


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   RESNWKLIARRSIFDCRHRCC 63
           RE NW+ + RR  + C  R C
Sbjct: 221 RELNWEYVTRRRCYSCPGRLC 241


>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
 Frame = +3

Query: 15  EINRASIDIRLSTPVLRPFSHRILVVE-FVRFHGKSFYWNLEVSQVPEILGIIRGSSDRF 191
           ++N+A +      P +   + R+   + F +   +S +W++++      L   +    RF
Sbjct: 359 DLNKAIMREHYPVPTIEDVATRLHGAKVFTKLDVRSGFWHIKLDNSSSYLTTFKTPFGRF 418

Query: 192 KITGICASL-SH*L*ERRKYAEVVNGTNGAGVDDDIVLTGLSGKLPESN 335
           +   +   + S     +RK  E++       + DD V+ G  G L E+N
Sbjct: 419 RWRRMPFGIRSAPEVFQRKLHEIIGMPQVGVIADDFVVVGKGGTLEEAN 467


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 177  SPELSQGSPVLD*LQGSNKNFYRETSQIQRLGFYGKTDATPVSTVEYRSTRD 22
            SP++S  S V D      ++F     Q+Q   F     A  VST E++   D
Sbjct: 850  SPDMSSNSSVYDVTHTDKRSFPIGCHQLQESAFDCNAQAQLVSTSEWKIDND 901


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 376 STPANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSA 248
           STP+  C+ N      + S P  P +  + STP+   P T SA
Sbjct: 268 STPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPS--TPSTPSA 308



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 376 STPANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSA 248
           STP+  C+ N      + S P  P +  + STP+   P T SA
Sbjct: 818 STPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPS--TPSTPSA 858


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 111  GKSFYWNLEVSQVPEILGIIRG---SSDRFKITGIC 209
            G   +W  EVSQ+  ++ ++ G     DR KI  IC
Sbjct: 2106 GTQIWWTTEVSQLSTLINMLIGDLSKGDRQKIMTIC 2141


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 239 SLLQLMRQRCANPSNFEPIRRAPNYPKDLRYLTDFKVPIKTFTVKPHK 96
           SLL L  Q+       E +   P   KD  +L  FK+P     +K  K
Sbjct: 200 SLLHLGAQKVVAAHKPEKVADTPKKKKDGSFLVHFKIPYLVTPIKDKK 247


>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
          Length = 475

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 10  NWKLIARRSIFDCRHRCCVRFPIES 84
           +W L++ RS+  C+ RCC++ P+ S
Sbjct: 253 DW-LLSARSVVVCKIRCCLQDPLLS 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,800,241
Number of Sequences: 59808
Number of extensions: 230621
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)