Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0773
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    38   0.002
AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      27   3.4  
AC006708-14|AAT81172.1|  273|Caenorhabditis elegans Metaphase-to...    27   3.4  
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    27   3.4  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +3

Query: 288 DDIVLTGLSGKLPESNNIE*FAEQLFAGVDL 380
           DDIV++G+SG+ P  +N++ F + L AG DL
Sbjct: 11  DDIVISGVSGRFPRCDNVKMFGDMLLAGEDL 41


>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 328 SGSFPDRPVSTMSSSTPAPLVPFTTSA 248
           +G + D P S++ S TP+P VP  +S+
Sbjct: 195 NGLYLDSPASSLKSETPSPNVPGPSSS 221


>AC006708-14|AAT81172.1|  273|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform b protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 328 SGSFPDRPVSTMSSSTPAPLVPFTTSA 248
           +G + D P S++ S TP+P VP  +S+
Sbjct: 195 NGLYLDSPASSLKSETPSPNVPGPSSS 221


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 328 SGSFPDRPVSTMSSSTPAPLVPFTTSA 248
           +G + D P S++ S TP+P VP  +S+
Sbjct: 195 NGLYLDSPASSLKSETPSPNVPGPSSS 221


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 370 PANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSAYFLRS 233
           P N       +   S S+PD  VST SS+T +   P T+ +   RS
Sbjct: 220 PPNPYGGQTQVSPSSNSYPDSTVSTTSSNTESYEQPSTSPSERPRS 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,127
Number of Sequences: 27780
Number of extensions: 174945
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)