Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0773
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 43  DCRHRCCVRFPIES*SLNL*GFTVKVFIGTLKS 141
           DCR+    R P E  S+N      K +I T+KS
Sbjct: 20  DCRYDKMTRPPGEINSINPINVYTKAYIYTIKS 52


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 265 PFTTSAYFLRS 233
           PFTTSA+F RS
Sbjct: 139 PFTTSAHFRRS 149


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 354 RRTIRYCWTPAASRTDRSVLC 292
           R  + + W   A  +DR++LC
Sbjct: 414 RERMEFDWKQVALVSDRALLC 434


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 329 VQQYRIVRRATIRWS 373
           +Q+ R +RR  +RW+
Sbjct: 10  IQERRHIRRELLRWT 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,997
Number of Sequences: 438
Number of extensions: 2554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)