Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0773
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 27 4.2
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 27 4.2
At2g32190.1 68415.m03934 expressed protein 27 4.2
At5g42690.1 68418.m05200 expressed protein contains Pfam profile... 27 5.6
At5g07900.1 68418.m00912 mitochondrial transcription termination... 27 5.6
At3g63180.1 68416.m07097 expressed protein 27 5.6
At1g34190.1 68414.m04241 no apical meristem (NAM) family protein... 27 5.6
At5g08340.2 68418.m00983 riboflavin biosynthesis protein-related... 26 7.4
At5g08340.1 68418.m00982 riboflavin biosynthesis protein-related... 26 7.4
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 26 7.4
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 26 7.4
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to... 26 7.4
At4g31150.2 68417.m04421 endonuclease V family protein contains ... 26 9.7
At4g31150.1 68417.m04422 endonuclease V family protein contains ... 26 9.7
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta... 26 9.7
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 78 RILVVEFVRFHGKSFYWNLEVSQVPEIL----GIIRGSSDRFKI 197
R +V + V+F G SF + LE PEIL + +GS D F +
Sbjct: 152 RFVVEDIVKF-GSSFRFGLEAGSKPEILLAMSCLCKGSPDAFLV 194
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 78 RILVVEFVRFHGKSFYWNLEVSQVPEIL----GIIRGSSDRFKI 197
R +V + V+F G SF + LE PEIL + +GS D F +
Sbjct: 152 RFVVEDIVKF-GSSFRFGLEAGSKPEILLAMSCLCKGSPDAFLV 194
>At2g32190.1 68415.m03934 expressed protein
Length = 71
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 352 ANYSILLDSGSFPDRPVSTMSSSTPAPL 269
+ YS SG++P PVST TP PL
Sbjct: 2 SQYSQNQSSGAYPTPPVSTGPYMTPPPL 29
>At5g42690.1 68418.m05200 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; expression
supported by MPSS
Length = 512
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 143 TDFKVPIKTFTVKPHKFN-D*DSMGKRTQHRCRQSNIDR 30
T K P+K T+ + N ++ + HRCR++N +R
Sbjct: 162 TSIKTPMKKTTIAHTQLNKSLEAQKLKDSHRCRKTNAER 200
>At5g07900.1 68418.m00912 mitochondrial transcription termination
factor family protein / mTERF family protein low
similarity to SP|Q99551 Transcription termination
factor, mitochondrial precursor (mTERF) {Homo sapiens};
contains Pfam profile PF02536: mTERF
Length = 405
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 256 TSAYFLRSYN**DND-AQIPVILNRSDEPRIIPRISGT 146
T YF+ N AQ PV+L S E RIIPR S T
Sbjct: 317 TMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVT 354
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 376 STPANSCSANYSILLDSGSFPDRPVSTMSSSTPAPLVPFTTSAYF 242
S+ A+ S+ Y ++ + ++ + ST+ TP+ VPF +++
Sbjct: 580 SSSASEVSSPYLTVIPNNAYSFQLSSTIRGGTPSQAVPFYNGSFY 624
>At1g34190.1 68414.m04241 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein;
similar to NAM protein GI:6066595 [Petunia hybrida];
nam-like protein 9 (GI:21105746) [Petunia x hybrida];
NAC1 GI:7716952 [Medicago truncatula]
Length = 557
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 126 NKNFYRETSQIQRLGFYGKTDATPVST 46
N+ F R +S R+ F GK + TPVST
Sbjct: 489 NRTFVRMSS-FSRMRFNGKANGTPVST 514
>At5g08340.2 68418.m00983 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 351
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 127 GTLKSVKYRRSLG*FGARRIGSKLLGFAHRCLINCKSEGNMP 252
G + S + R++L G R S+LLG AHR ++ +++ +MP
Sbjct: 256 GQVSSTRVRQALA-AGDMRYVSELLGRAHRLILRVRTQ-DMP 295
>At5g08340.1 68418.m00982 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 367
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 127 GTLKSVKYRRSLG*FGARRIGSKLLGFAHRCLINCKSEGNMP 252
G + S + R++L G R S+LLG AHR ++ +++ +MP
Sbjct: 256 GQVSSTRVRQALA-AGDMRYVSELLGRAHRLILRVRTQ-DMP 295
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 373 TPANSCSANYSILLDSG--SFPDRPVSTMSSSTPAPLV 266
TP + A+ ++++G S P PV TMSS++P P+V
Sbjct: 214 TPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVV 251
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 373 TPANSCSANYSILLDSG--SFPDRPVSTMSSSTPAPLV 266
TP + A+ ++++G S P PV TMSS++P P+V
Sbjct: 475 TPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVV 512
>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 491
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 186 DPT-SPELSQGSPVLD*LQGSNKNFYRETSQIQRLGFYGKT-DATPVSTVE 40
+PT S EL++G D L+ + K+F + S+I RL GK+ + P+ +E
Sbjct: 54 EPTPSLELTRGYMTNDDLEKAMKDFTKRCSKISRLYSIGKSVNGFPLWVIE 104
>At4g31150.2 68417.m04421 endonuclease V family protein contains
Pfam PF04493: Endonuclease V
Length = 263
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 180 TSPELSQGSPVLD*LQGSNKNFYRETSQI 94
+S ELSQGS +L + G + +F +E S +
Sbjct: 29 SSTELSQGSEILKYVGGVDMSFCKEDSSV 57
>At4g31150.1 68417.m04422 endonuclease V family protein contains
Pfam PF04493: Endonuclease V
Length = 277
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 180 TSPELSQGSPVLD*LQGSNKNFYRETSQI 94
+S ELSQGS +L + G + +F +E S +
Sbjct: 43 SSTELSQGSEILKYVGGVDMSFCKEDSSV 71
>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 416
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 248 IFPSLLQLMRQRCANPSNFEPIRRAPN-YPKDLRY 147
I L + ++ RC P F P+ P+ P+D+ Y
Sbjct: 313 ILTMLTRSLQPRCPGPQQFAPLLAPPDTVPRDVMY 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,900
Number of Sequences: 28952
Number of extensions: 166379
Number of successful extensions: 491
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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