Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0772
(545 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 114 1e-24
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 78 1e-13
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 75 8e-13
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 64 2e-09
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 59 6e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 53 5e-06
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 52 7e-06
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 50 3e-05
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 48 2e-04
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 47 3e-04
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 46 4e-04
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 46 6e-04
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 46 6e-04
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 46 8e-04
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 45 0.001
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 44 0.003
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 43 0.004
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 43 0.004
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 42 0.009
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 42 0.012
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.021
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 40 0.038
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 38 0.15
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.26
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 1.4
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ... 33 4.3
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 114 bits (275), Expect = 1e-24
Identities = 55/61 (90%), Positives = 59/61 (96%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKS
Sbjct: 63 LDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKS 122
Query: 258 I 256
I
Sbjct: 123 I 123
Score = 114 bits (275), Expect = 1e-24
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 80
HAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQ
Sbjct: 125 HARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 78.2 bits (184), Expect = 1e-13
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KS
Sbjct: 53 LDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKS 112
Query: 258 I 256
I
Sbjct: 113 I 113
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 75.4 bits (177), Expect = 8e-13
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = -3
Query: 435 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
+ KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSI
Sbjct: 63 DAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSI 122
Score = 50.0 bits (114), Expect = 4e-05
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLRKGQ 80
HAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN G+
Sbjct: 124 HARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 80
HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN++KG+
Sbjct: 130 HACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKKGR 187
Score = 55.2 bits (127), Expect = 9e-07
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFK 277
L EKDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQVF+
Sbjct: 63 LNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFE 121
Query: 276 AGLAKSI 256
L KSI
Sbjct: 122 LVLDKSI 128
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.3 bits (137), Expect = 6e-08
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -2
Query: 217 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 95
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 67
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -3
Query: 363 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -2
Query: 193 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 89
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 52.8 bits (121), Expect = 5e-06
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTI 119
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 52.4 bits (120), Expect = 7e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +1
Query: 262 LRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSLGVLLLEG 441
L Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL VL + G
Sbjct: 72 LGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSG 131
Score = 49.2 bits (112), Expect = 6e-05
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 77 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGM 253
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSV 68
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = -3
Query: 405 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTM 115
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/52 (40%), Positives = 36/52 (69%)
Frame = -3
Query: 408 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIL 253
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA++++
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVI 128
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 46.8 bits (106), Expect = 3e-04
Identities = 22/58 (37%), Positives = 38/58 (65%)
Frame = -3
Query: 429 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSI 125
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 46.4 bits (105), Expect = 4e-04
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -2
Query: 250 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 137
ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 127 ARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 46.0 bits (104), Expect = 6e-04
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 8/58 (13%)
Frame = -3
Query: 405 GNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLAKS+
Sbjct: 70 GRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSV 127
Score = 39.1 bits (87), Expect = 0.066
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -2
Query: 262 VHPHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 128
VH HAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 127 VH-HARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 46.0 bits (104), Expect = 6e-04
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -3
Query: 387 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSI
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSI 121
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 45.6 bits (103), Expect = 8e-04
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = -3
Query: 408 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLART 119
Score = 33.5 bits (73), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 250 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 104
AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 45.2 bits (102), Expect = 0.001
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = -3
Query: 408 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
E L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTM 117
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 256
++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTI 116
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 43.2 bits (97), Expect = 0.004
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = -3
Query: 384 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L R G+L ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANT 118
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 43.2 bits (97), Expect = 0.004
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 41.9 bits (94), Expect = 0.009
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALS 120
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 41.5 bits (93), Expect = 0.012
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 265
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLS 115
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.021
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -2
Query: 232 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 89
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 39.9 bits (89), Expect = 0.038
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3
Query: 432 PRGGARYPIRPIVSRIT 482
PRGGARYPIRPIVSRIT
Sbjct: 259 PRGGARYPIRPIVSRIT 275
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 37.9 bits (84), Expect = 0.15
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = -3
Query: 396 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 78 LISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.1 bits (82), Expect = 0.26
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2
Query: 175 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR 89
+DS KH DFSL SP G R +VKRK L+
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLK 29
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 1.4
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA 251
+G+ KSMC S RT G FT CL TRI RIK A
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRA 97
Score = 32.3 bits (70), Expect = 7.5
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 260 DFARPALNTCVCRRRSKK 313
D ARP+L T VC+RRSKK
Sbjct: 101 DLARPSLKTSVCKRRSKK 118
>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
uncultured bacterium|Rep: Non-ribosomal peptide
synthetase - uncultured bacterium
Length = 338
Score = 33.1 bits (72), Expect = 4.3
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3
Query: 477 YDSL*GELGTGPPLE 433
YDSL GELGTGPPLE
Sbjct: 278 YDSLYGELGTGPPLE 292
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,916,647
Number of Sequences: 1657284
Number of extensions: 12204278
Number of successful extensions: 34474
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 33297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34464
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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