Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0772
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.7  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   3.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 414 ISWGPSPRGGARYPIRPIVSRITIHWPSFYN 506
           IS  P+P        +P+ +   + +PS+YN
Sbjct: 336 ISAQPTPSQSPNQIYQPVTNLTNLTYPSYYN 366


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 530 TPGFSQSHVVKR--RPVNCNTTHYRANWVPGPPSRRRTPRDCSK 405
           T G S + +V+   +PV   T    +   P PPSR  T   C+K
Sbjct: 381 TLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLCTK 424


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 444 PPLEEKDPKRLFEGNALLR 388
           P  EEK P+  F G  L R
Sbjct: 224 PTAEEKRPRTAFSGAQLAR 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,483
Number of Sequences: 336
Number of extensions: 2987
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)