Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0772
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   110   1e-25
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   110   1e-25
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    28   1.0  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   3.2  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   3.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   5.5  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   7.3  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    25   9.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  110 bits (265), Expect = 1e-25
 Identities = 51/61 (83%), Positives = 58/61 (95%)
 Frame = -3

Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121

Query: 258 I 256
           I
Sbjct: 122 I 122



 Score = 97.9 bits (233), Expect = 9e-22
 Identities = 43/58 (74%), Positives = 50/58 (86%)
 Frame = -2

Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 80
           HAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 124 HARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  110 bits (264), Expect = 1e-25
 Identities = 51/61 (83%), Positives = 58/61 (95%)
 Frame = -3

Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121

Query: 258 I 256
           I
Sbjct: 122 I 122



 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = -2

Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 89
           HAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 124 HARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -3

Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
           L+  DP RL   N LL +L  +G+L  K    D      +     RRL   + K  +++ 
Sbjct: 64  LDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQV 123

Query: 258 I 256
           +
Sbjct: 124 V 124


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 173 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGWR 72
           G + A  +L ++S  W+ +W  +E++      WR
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKWR 416


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 351 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSILM 250
           +++D  L + +E FL++   TQ+    +A  IL+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILL 165


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 283 VQSWPGEVHPHARILIRQRHIRVRKQVVN 197
           +Q +PG+  P  RI +  RHI++R    N
Sbjct: 128 LQLFPGDEKPGMRIQLANRHIQLRAPKYN 156


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 503 VKRRPVNCNTTHYR--ANWVPGPPSRRRTPRDCSKVM 399
           +K+ P+ C   H +  + W   PP    +P+D SK++
Sbjct: 664 LKKTPI-CRWCHSKRSSEWFVAPPIEESSPKDKSKIV 699


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 197 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 96
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 296 CRRRCSKLAWRSPSSCQNFDPAKAYSCPQASCEH 195
           C+RR S   W++ + C N  P  A    +  C H
Sbjct: 136 CKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFCMH 169


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 322  D*GLLGASSADAGVQSWPGEVHP 254
            D GLLGA+S   GVQS PG   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSP 1542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,096
Number of Sequences: 5004
Number of extensions: 46320
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)