Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0772
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 99 3e-21
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 99 3e-21
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 99 3e-21
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 78 4e-15
07_03_1357 - 25982861-25983068,25983354-25983361 61 5e-10
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 32 0.26
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 29 2.4
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 28 4.2
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 27 7.4
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 27 9.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 86
HAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 126 HARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 64 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 123
Query: 258 I 256
I
Sbjct: 124 I 124
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 86
HAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 149 HARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 87 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 146
Query: 258 I 256
I
Sbjct: 147 I 147
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 86
HAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 342 HARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 280 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 339
Query: 258 I 256
I
Sbjct: 340 I 340
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 78.2 bits (184), Expect = 4e-15
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
L+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KS
Sbjct: 53 LDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKS 112
Query: 258 I 256
I
Sbjct: 113 I 113
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2
Query: 220 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 95
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 268 GEVHPHARILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSPFG 128
G V P R L+ + I +R +N IPS+I +D+ KH+D S G
Sbjct: 274 GSVFPDLRELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTG 322
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 311 SWSVVCRRRCSKLAWRSPSSC---QNFDPAKAYSCPQASC 201
+W+V+C LA + PS C +FD K CP SC
Sbjct: 208 TWNVICTYS-QFLAQKVPSCCVSLSSFDNDKTVDCPTCSC 246
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 275 LAWRSPS--SCQNFDPAKAYSCPQASCEHPIIYCA 177
L+WRS CQ++DPAK Y+ Q H I+ A
Sbjct: 402 LSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 380 FVLEYWMKNR*NSIMCLV*RLRTSWSVVC 294
FV +W + + M LV RL TSW+VVC
Sbjct: 273 FVDAFWNSKKQSFTMHLV-RLMTSWAVVC 300
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 241 KFWHEDGLRQASFEHLRLQTTLQEVLNLQTKH 336
KFW LR L+L ++ E+ NLQT H
Sbjct: 623 KFWRIKTLRHVIAAQLQLPNSVGELNNLQTLH 654
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,167
Number of Sequences: 37544
Number of extensions: 362101
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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