Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0772
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 115 3e-26
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 31 0.72
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 0.95
AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B prot... 30 0.95
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 0.95
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 0.95
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 0.95
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 0.95
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 0.95
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 30 1.2
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 2.2
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 2.9
U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical pr... 28 3.8
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 3.8
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet... 27 6.7
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 115 bits (276), Expect = 3e-26
Identities = 55/61 (90%), Positives = 59/61 (96%)
Frame = -3
Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
LE+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKS
Sbjct: 62 LEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKS 121
Query: 258 I 256
I
Sbjct: 122 I 122
Score = 105 bits (252), Expect = 2e-23
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 83
HARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 124 HARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 196 CSQLACGHEYAFAGSKFWHEDGLRQAS--FEHLRLQTTLQEVLNL 324
C + CG E+ F K WHE G R S FE L+ + T E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHE-GTRTCSKTFEQLK-KITENEINDL 194
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307
>AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B
protein.
Length = 750
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 365 EVTGHYL-TLSWIPTKRAPPRYP 386
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 5646 EVTGHYL-TLSWIPTKRAPPRYP 5667
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 5646 EVTGHYL-TLSWIPTKRAPPRYP 5667
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 387 DVEGHYLRTISWGPSPRGGARYP 455
+V GHYL T+SW P+ R RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 193 GCSQLACGHEYAFAGSKFWHED 258
GC +L +EY FA K WH D
Sbjct: 339 GCDELIFANEYTFAEEKSWHFD 360
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 536 WVTPGFSQSHVVKRRPVNCNTTHYRANWVPGPPSRRRTP 420
W+ S +HVVK T H R + P P+R R P
Sbjct: 83 WLDLTRSINHVVKNFKTESMTLHLRFRYYPSDPARLRDP 121
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 393 EGHYLRTISWGPSPRGGARYPIRPIVSRITIHWPSFYNV 509
E H W P G RY + P +I +H PS +NV
Sbjct: 932 EDHDFCRFLWQPWNPGTQRYQLTPQSPKIILHEPSTWNV 970
>U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical
protein F31E8.5 protein.
Length = 472
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 444 PPLEEKDPKRLFEGNALLRRL-VRIGVLDEKQMKLDYVLGLK 322
PP++EKD K+ + A L+ L ++ GVL ++ + V GLK
Sbjct: 241 PPVKEKDAKKSIDLLAYLKTLDMKNGVLANREKTCESVGGLK 282
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 297 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 431
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
protein 3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 6.7
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 495 TASEL*YDSL*GELGTGPPLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 316
TA L DSL GEL ++E+ K GNA++ ++G L + D V +
Sbjct: 93 TAVRLTVDSLEGELTNKWVVKEEGSKERIYGNAVIHFNAKLGQLIKPVPTGDSVAATDVT 152
Query: 315 DFLE-RRLQTQV 283
D E TQV
Sbjct: 153 DLQEFATFMTQV 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,512
Number of Sequences: 27780
Number of extensions: 282218
Number of successful extensions: 867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -