Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0772
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    99   1e-21
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...    99   2e-21
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.88 
At1g49470.1 68414.m05544 expressed protein contains Pfam profile...    29   1.5  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    29   2.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   3.5  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   6.2  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =   99 bits (238), Expect = 1e-21
 Identities = 44/57 (77%), Positives = 52/57 (91%)
 Frame = -2

Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 83
           HAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 126 HARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/61 (70%), Positives = 53/61 (86%)
 Frame = -3

Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
           L+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64  LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 258 I 256
           I
Sbjct: 124 I 124


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 44/53 (83%), Positives = 50/53 (94%)
 Frame = -2

Query: 253 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 95
           H+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 126 HSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/61 (70%), Positives = 52/61 (85%)
 Frame = -3

Query: 438 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 259
           L+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64  LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 258 I 256
           I
Sbjct: 124 I 124


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 122 TSTEWRFQREVNVLARVQAHN 184
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At1g49470.1 68414.m05544 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 302

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 37  WLINLPLHHWRLRHPVPCGGSSS*HVQDDLHRMEISERSQCACQSPGAQ 183
           W +N+    W +   VP G  S+     D +R  +      AC+SPGA+
Sbjct: 186 WFLNMGFMLW-IPEYVPRGCVSNMSTSTDNNRRSVYHSGAVACESPGAE 233


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = +3

Query: 285 PASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTIS------WGPSPRGGA 446
           P++    P SP ++       SS   P   Y P    G Y    S      + P P+ G 
Sbjct: 51  PSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGG 110

Query: 447 RYPIRPIVSRITIHWPSFY 503
            YP  P  + I  ++P +Y
Sbjct: 111 NYPYTPPPNPIVPYFPFYY 129


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 355 TDETRLCAWSED*GLLGASSADAGVQSW 272
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 387 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 286
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,425
Number of Sequences: 28952
Number of extensions: 266446
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)