Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0770
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.38 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.7  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   6.2  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 14   KHLLLYFHQKVKFKIKYLNIVRHAKREIVATLTLQTFKTRGLPHSRH 154
            K LLL  +  VKF IKY   ++  K E V  + ++ FK R + +  H
Sbjct: 1488 KELLLEAY--VKFLIKYPEFIKSQKMEEVHQVIVREFKRRNIVYKSH 1532


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 320 SLKCLYCNVLIFFFHIIFINCQYTIVIFCKLY 225
           S+K  Y N +IFF   +   C + I+ F +LY
Sbjct: 607 SMKVSYPN-MIFFLSAVIYGCCFIIIFFMRLY 637


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 350 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 267
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 350 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 267
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 350 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 267
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 350 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 267
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 230 LYVHISELHIIIIKVTRFSSVFVLYCDGN 144
           +Y+   ELH+ ++ +    +  V  CDGN
Sbjct: 196 IYLKAKELHLPLVHIFNVENEIVENCDGN 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,607
Number of Sequences: 5004
Number of extensions: 31691
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)